Input parameters:

  Query = YGL137W (Len=889)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YGL137W, Len=889):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIR 80  
WD40-rpts       (_________________WD 1_________________)   (_________________WD 2______________

Query       81 VFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGC 160 
WD40-rpts      __)   (_________________WD 3________________)(___________________WD 4___________

Query      161 LDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTL 240 
WD40-rpts      ________)(____________________WD 5___________________)   (_________________WD 6_

Query      241 PIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGG 320 
WD40-rpts      _______________)   (_________________WD 7_________________)   (_________________

Query      321 KNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVGDGEYVIYTALAWRNKAFGKCQDFVW 400 
WD40-rpts      WD 8________________)                                  (____________________WD 9

Query      401 GPDSNSYALIDETGQIKYYKNFKEVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGTLVRRIDVNAKDVIWSDNG 480 
WD40-rpts      ___________________)(________________WD10_______________)(_________________WD11_

Query      481 ELVMIVNTNSNGDEASGYTLLFNKDAYLEAANNGNIDDSEGVDEAFDVLYELSESITSGKWVGDVFIFTTATNRLNYFVG 560 
WD40-rpts      _______________)      (_________________WD12_________________)                  

Query      561 GKTYNLAHYTKEMYLLGYLARDNKVYLADREVHVYGYEISLEVLEFQTLTLRGEIEEAIENVLPNVEGKDSLTKIARFLE 640 
WD40-rpts                                                                                      

Query      641 GQEYYEEALNISPDQDQKFELALKVGQLTLARDLLTDESAEMKWRALGDASLQRFNFKLAVEAFTNAHDLESLFLLHSSF 720 
WD40-rpts                                                                                      

Query      721 NNKEGLVTLAKDAERAGKFNLAFNAYWIAGDIQGAKDLLIKSQRFSEAAFLGSTYGLGDDAVNDIVTKWKENLILNGKNT 800 
WD40-rpts                                                                                      

Query      801 VSERVCGAEGLPGSSSSGDAQPLIDLDSTPAPEQADENKEAEVEDSEFKESNSEAVEAEKKEEEAPQQQQSEQQPEQGEA 880 
WD40-rpts                                                                                      

Query      881 VPEPVEEES 889 
WD40-rpts               

12 WD40-repeats found in QUERY=YGL137W (Len=889):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     2-41       6.16  369.29  0.00066       17.5%     48.14
  WD 2:  Seg  4    45-83       6.73  392.86  0.00032       20.0%     56.93
  WD 3:  Seg  8    87-125      8.45  463.54  3.5e-05       30.0%     56.16
  WD 4:  Seg 12   126-169      7.55  426.40  0.00011       37.5%     53.50
  WD 5:  Seg 16   170-214      6.99  403.60  0.00023       35.0%     50.26
  WD 6:  Seg 20   218-256      9.74  517.04  6.7e-06       45.0%     54.08
  WD 7:  Seg 24   260-299      3.67  266.45  0.01586       15.0%     54.63
  WD 8:  Seg 28   303-341      3.81  271.93  0.01340       15.0%     28.61
  WD 9:  Seg 34   376-420      4.05  282.11  0.00978       22.5%     46.26
  WD10:  Seg 38   421-457      3.39  254.71  0.02276       17.5%     44.94
  WD11:  Seg 42   458-496      3.75  269.59  0.01440        7.5%     28.28
  WD12:  Seg 46   503-542      3.38  254.46  0.02294       15.0%     19.93

Multiple sequence alignment of 12 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    2-41     KLD-----I---KKTFSNRSDRVKGIDFH--P-TEPW-VLTTLYSGRVELWN
   WD 2   45-83     -QV-----E---VRSIQVTETPVRAGKFI--A-RKNW-IIVGSDDFRIRVFN
   WD 3   87-125    -GE-----K---VVDFEAHPDYIRSIAVH--P-TKPY-VLSGSDDLTVKLWN
   WD 4  126-169    WEN--NWAL---EQTFEGHEHFVMCVAFN--PKDPST-FASGCLDRTVKVWS
   WD 5  170-214    LGQ-----STPNFTLTTGQERGVNYVDYYPLP-DKPY-MITASDDLTIKIWD
   WD 6  218-256    -KS-----C---VATLEGHMSNVSFAVFH--P-TLPI-IISGSEDGTLKIWN
   WD 7  260-299    -YK-----V---EKTLNVGLERSWCIATH--P-TGRKNYIASGFDNGFTVLS
   WD 8  303-341    -DE-----P---TLSLDPVGKLVWSGGKN--A-AASD-IFTAVIRGNEEVEQ
   WD 9  376-420    DGEYVIYTA---LAWRNKAFGKCQDFVWG--P-DSNS-YALIDETGQIKYYK
   WD10  421-457    NFK-----E---VTSWSVPMHSAIDRLFS--G----A-LLGVKSDGFVYFFD
   WD11  458-496    -WD-----N---GTLVRRIDVNAKDVIWS--D-NGEL-VMIVNTNSNGDEAS
   WD12  503-542    NKD-----A---YLEAANNGNIDDSEGVD--E-AFDV-LYELSESITSGKWV

   WD40 Template    TGE-----C---LRTLSGHTSGVTSVSFS--P-DGKR-LVSGSEDGTIKVWD