Input parameters:

  Query = YGL190C (Len=526)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YGL190C, Len=526):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAQNNFDFKFSQCFGDKADIVVTEADLITAVEFDYTGNYLATGDKGGRVVLFERSNSRHCEYKFLTEFQSHDAEFDYLKS 80  
WD40-rpts                    (_________________WD 1________________)                (__________

Query       81 LEIEEKINEIKWLRPTQRSHFLLSTNDKTIKLWKVYEKNIKLVSQNNLTEGVTFAKKGKPDNHNSRGGSVRAVLSLQSLK 160 
WD40-rpts      __________WD 2___________________)(_________________WD 3_________________)      

Query      161 LPQLSQHDKIIAATPKRIYSNAHTYHINSISLNSDQETFLSADDLRINLWNLDIPDQSFNIVDIKPTNMEELTEVITSAE 240 
WD40-rpts                         (_____________WD 4_____________)            (________________

Query      241 FHPQECNLFMYSSSKGTIKLCDMRQNSLCDNKTKTFEEYLDPINHNFFTEITSSISDIKFSPNGRYIASRDYLTVKIWDV 320 
WD40-rpts      _WD 5________________)             (___________________WD 6___________________) 

Query      321 NMDNKPLKTINIHEQLKERLSDTYENDAIFDKFEVNFSGDSSSVMTGSYNNNFMIYPNVVTSGDNDNGIVKTFDEHNAPN 400 
WD40-rpts         (________________________WD 7________________________)         (_____________

Query      401 SNSNKNIHNSIQNKDSSSSGNSHKRRSNGRNTGMVGSSNSSRSSIAGGEGANSEDSGTEMNEIVLQADKTAFRNKRYGSL 480 
WD40-rpts      ____WD 8________________)   (_________________WD 9________________)_____________

Query      481 AQRSARNKDWGDDIDFKKNILHFSWHPRENSIAVAATNNLFIFSAL 526 
WD40-rpts      ______________WD10__________________________) 

10 WD40-repeats found in QUERY=YGL190C (Len=526):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    15-53       8.38  460.89  3.8e-05       20.0%     53.42
  WD 2:  Seg  7    70-114      4.36  294.95  0.00658       12.5%     45.59
  WD 3:  Seg 10   115-154      7.78  436.01  8.3e-05       20.0%     39.19
  WD 4:  Seg 14   180-211      5.85  356.46  0.00098       22.5%     43.36
  WD 5:  Seg 18   224-262      6.74  392.90  0.00032       27.5%     41.42
  WD 6:  Seg 21   276-319      7.12  408.57  0.00019       32.5%     41.71
  WD 7:  Seg 24   324-377      6.06  365.00  0.00075       22.5%     47.07
  WD 8:  Seg 28   387-425      5.73  351.30  0.00115        7.5%      4.81
  WD 9:  Seg 29   429-467      6.69  391.21  0.00033       17.5%     13.76
  WD10:  Seg 31   467-525      3.97  278.55  0.01092        5.0%     44.67

Multiple sequence alignment of 10 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   15-53     -GDK---A-----DIVV-------------------TEADLIT---------------AVEFDY--TGNYLATGDKGGRVVLFE
   WD 2   70-114    SHDAEFDY-----LKSL-------------------EIEEKIN---------------EIKWLRPTQRSHFLLSTNDKTIKLWK
   WD 3  115-154    VYEK---N-----IKLV-------------------SQNNLTE---------------GVTFAK--KGKPDNHNSRGGSVRAVL
   WD 4  180-211    ---------------SN-------------------AHTYHIN---------------SISLNS--DQETFLSAD-DLRINLWN
   WD 5  224-262    I--K---P-----TNME-------------------ELTEVIT---------------SAEFHP-QECNLFMYSSSKGTIKLCD
   WD 6  276-319    FEEY---LDPINHNFFT-------------------EITSSIS---------------DIKFSP--NGRYIASRD-YLTVKIWD
   WD 7  324-377    -NKP---L-----KTIN-------------------IHEQLKERLSDTYENDAIFDKFEVNFSG--DSSSVMTGSYNNNFMIYP
   WD 8  387-425    -NGI---V-----KTFD-------------------EHNAPNS---------------NSNKNI--HNSIQNKDSSSSGNSHKR
   WD 9  429-467    -GRN---T-----GMVG-------------------SSNSSRS---------------SIAGGE--GANSEDSGTEMNEIVLQA
   WD10  467-525    ADKT---A-----FRNKRYGSLAQRSARNKDWGDDIDFKKNIL---------------HFSWHP--RENSIAVAATNNLFIFSA

   WD40 Template    TGEC---L-----RTLS-------------------GHTSGVT---------------SVSFSP--DGKRLVSGSEDGTIKVWD