Input parameters:

  Query = YGL213C (Len=397)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YGL213C, Len=397):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSKVFIATANAGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFE 80  
WD40-rpts      (__________________WD 1__________________)                            (_________

Query       81 LCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFAD 160 
WD40-rpts      ________WD 2________________)   (__________________WD 3__________________)      

Query      161 ESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVK 240 
WD40-rpts                       (_______________WD 4_______________)         (_________________

Query      241 FSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDV 320 
WD40-rpts      _WD 5__________________)                (_________________WD 6________________) 

Query      321 KTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 
WD40-rpts        (___________________WD 7___________________)                               

7 WD40-repeats found in QUERY=YGL213C (Len=397):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-42       7.13  409.29  0.00019       32.5%     45.04
  WD 2:  Seg  6    71-109      7.68  432.07  9.3e-05       25.0%     43.12
  WD 3:  Seg 10   113-154      7.32  416.93  0.00015       22.5%     45.11
  WD 4:  Seg 14   178-213      7.15  410.08  0.00019       20.0%     43.31
  WD 5:  Seg 17   223-264      7.31  416.80  0.00015       22.5%     46.57
  WD 6:  Seg 21   281-319      9.32  499.74  1.1e-05       32.5%     41.46
  WD 7:  Seg 24   323-366      5.40  337.64  0.00175       17.5%     44.70

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-42     MSKVFIATANAGKAHDADI----FSVSACNS-----FTVSCSG-DGY---LKVWD
   WD 2   71-109    -LQ----AIERDAFELCLV----ATTSFSGD---LLFYRITRE-DET---KKVIF
   WD 3  113-154    -DL----LDSDMKKHSFWA----LKWGASNDRLLSHRLVATDV-KGT---TYIWK
   WD 4  178-213    -------TVESPMTPSQFA----TSVDISER---G-LIATGFN-NGT---VQISE
   WD 5  223-264    -FE----SQHSMINNSNSI----RSVKFSPQ---GSLLAIAHD-SNSFGCITLYE
   WD 6  281-319    -SQ----ASLGEFAHSSWV----MSLSFNDS---GETLCSAGW-DGK---LRFWD
   WD 7  323-366    -KE----RITTLNMHCDDIEIEEDILAVDEH---GDSLAEPGVFDVK---FLKKG

   WD40 Template    TGE----CLRTLSGHTSGV----TSVSFSPD---GKRLVSGSE-DGT---IKVWD