Input parameters:

  Query = YGR054W (Len=642)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YGR054W, Len=642):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSSQFFLKTSQDIELFQSYPTFEQSNTNSKDFPVISSVLSPCGRFLALSTKENVKVFTGPCLDNVLLTMKLSDVYDLHFS 80  
WD40-rpts                          (________________WD 1________________)(_____________________

Query       81 PAGNYLSTWERASIQDPNHKNVKVWYLNKPFKKDCVSEDIVPAYEYQAKSQSGWFLQFSKLDNYGLRLFKHDLKIVKLSS 160 
WD40-rpts      WD 2_____________________)                                                      

Query      161 ANADNFDFQSPFAVLSDDETSQHFTTYLISPAEHPTICTFTPEKGGKPAQLIIWALSEGKITKKIASKTFFKADSCQLKW 240 
WD40-rpts                                                                                      

Query      241 NPLGNAILCLAITDFDSSNKSYYGENTLYLLSFQGVNGTLGGNSVRVSLTTGPVHDFTWSPTSRQFGVIAGYMPATISFF 320 
WD40-rpts                                              (__________________WD 3_________________

Query      321 DLRGNVVHSLPQQAKNTMLFSPSGHYILIAGFGNLQGSVEILDRLDKFKCVSKFDATNTSVCKWSPGGEFIMTATTSPRL 400 
WD40-rpts      )(__________________WD 4__________________)(__________________WD 5______________

Query      401 RVDNGVKIWHVSGSLVFVKEFKELLKVDWRSPCNYKTLENKDEAFFENHIINNWEPLPDSTTSSLDPKISNKSELQIHSS 480 
WD40-rpts      ___)                                                                            

Query      481 VQEYISQHPSREASSNGNGSKAKAGGAYKPPHARRTGGGRIVPGVPPGAAKKTIPGLVPGMSANKDANTKNRRRRANKKS 560 
WD40-rpts                                                                                      

Query      561 SETSPDSTPAPSAPASTNAPTNNKETSPEEKKIRSLLKKLRAIETLKERQAVGDKLEDTQVLKIQTEEKVLKDLEKLGWK 640 
WD40-rpts                                                                                      

Query      641 DE 642 
WD40-rpts        

5 WD40-repeats found in QUERY=YGR054W (Len=642):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    21-58       3.77  270.48  0.01401       20.0%     40.11
  WD 2:  Seg  6    59-106      3.53  260.35  0.01914       27.5%     42.29
  WD 3:  Seg 22   281-321      4.02  280.53  0.01028       25.0%     48.94
  WD 4:  Seg 26   322-363      3.26  249.14  0.02700       20.0%     39.82
  WD 5:  Seg 30   364-404      3.12  243.41  0.03218       12.5%     43.17

Multiple sequence alignment of 5 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   21-58     -TFEQSNT-N-SKDFPVISSVLSPCGRFL--A---L-------STKEN-VKVFT
   WD 2   59-106    GPCLDNVLLT-MKLSDVYDLHFSPAGNYL--S---TWERASIQDPNHKNVKVWY
   WD 3  281-321    -GGNSVRV-S-LTTGPVHDFTWSPTSRQFGVI---A-------GYMPATISFFD
   WD 4  322-363    -LRGNVVH-S-LPQQAKNTMLFSPSGHYI--LIAGF-------GNLQGSVEILD
   WD 5  364-404    RLDKFKCV-SKFDATNTSVCKWSPGGEFI--M---T-------ATTSPRLRVDN

   WD40 Template    TGECLRTL-S-GHTSGVTSVSFSPDGKRL--V---S-------GSEDGTIKVWD