Input parameters:

  Query = YGR145W (Len=707)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YGR145W, Len=707):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MVLKSTSANDVSVYQVSGTNVSRSLPDWIAKKRKRQLKNDLEYQNRVELIQDFEFSEASNKIKVSRDGQYCMATGTYKPQ 80  
WD40-rpts                                            (_____________________WD 1________________

Query       81 IHVYDFANLSLKFDRHTDAENVDFTILSDDWTKSVHLQNDRSIQFQNKGGLHYTTRIPKFGRSLVYNKVNCDLYVGASGN 160 
WD40-rpts      ____)(__________________WD 2__________________)                                 

Query      161 ELYRLNLEKGRFLNPFKLDTEGVNHVSINEVNGLLAAGTETNVVEFWDPRSRSRVSKLYLENNIDNRPFQVTTTSFRNDG 240 
WD40-rpts               (_________________WD 3________________)            (_______________WD 4

Query      241 LTFACGTSNGYSYIYDLRTSEPSIIKDQGYGFDIKKIIWLDNVGTENKIVTCDKRIAKIWDRLDGKAYASMEPSVDINDI 320 
WD40-rpts      _______________)                                                (_______________

Query      321 EHVPGTGMFFTANESIPMHTYYIPSLGPSPRWCSFLDSITEELEEKPSDTVYSNYRFITRDDVKKLNLTHLVGSRVLRAY 400 
WD40-rpts      _WD 5________________)                                                          

Query      401 MHGFFINTELYDKVSLIANPDAYKDEREREIRRRIEKERESRIRSSGAVQKPKIKVNKTLVDKLSQKRGDKVAGKVLTDD 480 
WD40-rpts                                                                                      

Query      481 RFKEMFEDEEFQVDEDDYDFKQLNPVKSIKETEEGAAKRIRALTAAEESDEERIAMKDGRGHYDYEDEESDEEESDDETN 560 
WD40-rpts                                                                                      

Query      561 QKSNKEELSEKDLRKMEKQKALIERRKKEKEQSERFMNEMKAGTSTSTQRDESAHVTFGEQVGELLEVENGKKSNESILR 640 
WD40-rpts                                                                                      

Query      641 RNQRGEAELTFIPQRKSKKDGNYKSRRHDNSSDEEGIEENGNKKDNGRSKPRFENRRRASKNAFRGM 707 
WD40-rpts                                                                         

5 WD40-repeats found in QUERY=YGR145W (Len=707):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    39-85       3.28  250.13  0.02620       20.0%     49.84
  WD 2:  Seg  7    86-127      4.49  300.21  0.00559       20.0%     53.34
  WD 3:  Seg 15   170-208      7.08  407.18  0.00020       30.0%     51.45
  WD 4:  Seg 20   221-256      5.84  355.87  0.00100       22.5%     45.15
  WD 5:  Seg 27   305-342      2.83  231.52  0.04621        7.5%     52.71

Multiple sequence alignment of 5 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   39-85     NDLEYQNRVELIQDFEFSEA--SNKIKVSRDGQYCMATGTYKPQIHVYD
   WD 2   86-127    FA------NLSLKFDRHTDAENVDFTILSDDWTK-SVHLQNDRSIQFQN
   WD 3  170-208    -G------RFLNPFKLDTEG--VNHVSINEVNGL-LAAGTETNVVEFWD
   WD 4  221-256    ----------ENNIDNRPFQ--VTTTSFRNDGLT-FACGTSNGYSYIYD
   WD 5  305-342    -G------KAYASMEPSVD---INDIEHVPGTGM-FFTANESIPMHTYY

   WD40 Template    TG------ECLRTLSGHTSG--VTSVSFSPDGKR-LVSGSEDGTIKVWD