Input parameters:

  Query = YGR200C (Len=788)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YGR200C, Len=788):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MVECITPEAIFIGANKQTQVSDIHKVKKIVAFGAGKTIALWDPIEPNNKGVYATLKGHEAEVTCVRFVPDSDFMVSASED 80  
WD40-rpts      (__________________WD 1__________________)(____________________WD 2_____________

Query       81 HHVKIWKFTDYSHLQCIQTIQHYSKTIVALSALPSLISVGCADGTISIWRQNIQNDEFGLAHEFTIKKGFFYPLCLSLSK 160 
WD40-rpts      ______)      (________________WD 3_______________)(_______________________WD 4__

Query      161 VEEKKYLLAIGGTNVNVFIASFILSDSGIEKCRVVAELEGHEDWVKSLAFRHQETPGDYLLCSGSQDRYIRLWRIRINDL 240 
WD40-rpts      ____________________)          (___________________WD 5__________________)   (__

Query      241 IDDSEEDSKKLTLLSNKQYKFQIDDELRVGINFEALIMGHDDWISSLQWHESRLQLLAATADTSLMVWEPDETSGIWVCS 320 
WD40-rpts      ____________WD 6______________)_________________WD 7________________)           

Query      321 LRLGEMSSKGASTATGSSGGFWSCLWFTHERMDFFLTNGKTGSWRMWATKDNIICDQRLGISGATKDVTDIAWSPSGEYL 400 
WD40-rpts        (____________________WD 8____________________)      (_________________WD 9____

Query      401 LATSLDQTTRLFAPWIYDASGRKREIATWHEFSRPQIHGYDMICVETVTDTRFVSGGDEKILRSFDLPKGVAGMLQKFVG 480 
WD40-rpts      ____________)               (________________WD10________________)              

Query      481 IQFEEKSEMPDSATVPVLGLSNKAGEDDANEDDEEEEGGNKETPDITDPLSLLECPPMEDQLQRHLLWPEVEKLYGHGFE 560 
WD40-rpts                                                                         (____________

Query      561 ITCLDISPDQKLIASACRSNNVQNAVIRIFSTENWLEIKPALPFHSLTITRLKFSKDGKFLLSVCRDRKWALWERNMEDN 640 
WD40-rpts      _______WD11___________________)     (________________WD12________________)      

Query      641 TFELRFKNEKPHTRIIWDADWAPLEFGNVFVTASRDKTVKVWRHQKEPADDYVLEASIKHTKAVTAISIHDSMIREKILI 720 
WD40-rpts           (________________WD13________________)       (___________________WD14______

Query      721 SVGLENGEIYLYSYTLGKFELITQLNEDITPADKITRLRWSHLKRNGKLFLGVGSSDLSTRIYSLAYE 788 
WD40-rpts      ____________)(_______________________WD15______________________)    

15 WD40-repeats found in QUERY=YGR200C (Len=788):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-42       4.82  313.57  0.00370       27.5%     49.67
  WD 2:  Seg  5    43-87       9.03  487.82  1.7e-05       45.0%     55.10
  WD 3:  Seg  9    94-130      6.13  367.69  0.00069       25.0%     50.12
  WD 4:  Seg 13   131-181      4.04  281.37  0.01001       12.5%     45.48
  WD 5:  Seg 17   192-234      7.21  412.61  0.00017       35.0%     54.66
  WD 6:  Seg 21   238-271      2.99  238.16  0.03777       10.0%     34.23
  WD 7:  Seg 24   271-309      8.09  448.93  5.5e-05       17.5%     51.58
  WD 8:  Seg 29   323-368      6.45  381.18  0.00045       20.0%     47.78
  WD 9:  Seg 33   375-413      8.11  449.75  5.4e-05       30.0%     48.92
  WD10:  Seg 37   429-466      5.16  327.85  0.00237       20.0%     53.77
  WD11:  Seg 43   548-591      6.60  387.45  0.00037       25.0%     50.11
  WD12:  Seg 47   597-634      8.43  462.92  3.6e-05       32.5%     48.76
  WD13:  Seg 51   646-683      6.59  387.00  0.00038       27.5%     41.87
  WD14:  Seg 54   691-733      5.75  352.07  0.00112       25.0%     49.91
  WD15:  Seg 58   734-784      4.74  310.66  0.00404       17.5%     41.02

Multiple sequence alignment of 15 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-42     MV-------E-----CITPEAIFIGANKQT-QVSD----IH----------KVKK----IVAFGAGK-----TIALWD
   WD 2   43-87     PI-------EPNNKGVY---ATLKGHEAEVTCVRF----VP----------DSDF----MVSASEDH-----HVKIWK
   WD 3   94-130    -L-------Q-----CI---QTIQHYSKTI--VAL----SA----------LPSL----ISVGCADG-----TISIWR
   WD 4  131-181    QN------IQ-----ND---EFGLAHEFTIKKGFF----YPLCLSLSKVEEKKYL----LAIGGTNV-----NVFIAS
   WD 5  192-234    -C-------R-----VV---AELEGHEDWVKSLAFRHQETP----------GDYL----LCSGSQDR-----YIRLWR
   WD 6  238-271    -N-------D-----LI---DDSEEDSKKLTLLSN----K-------------------QYKFQIDD-----ELRVGI
   WD 7  271-309    -I-------N-----FE---ALIMGHDDWISSLQW----HE----------SRLQ----LLAATADT-----SLMVWE
   WD 8  323-368    LG-------E-MSSKGA---STATGSSGGFWSCLW----FT----------HERM--DFFLTNGKTG-----SWRMWA
   WD 9  375-413    -C-------D-----QR---LGISGATKDVTDIAW----SP----------SGEY----LLATSLDQ-----TTRLFA
   WD10  429-466    -W-------H-----EF---SRPQIHGYDMICVET----VT----------DT-R----FVSGGDEK-----ILRSFD
   WD11  548-591    -W-------P-----EV---EKLYGHGFEITCLDI----SP----------DQKL----IASACRSNNVQNAVIRIFS
   WD12  597-634    ---------E-----IK---PALPFHSLTITRLKF----SK----------DGKF----LLSVCRDR-----KWALWE
   WD13  646-683    ----------------F---KNEKPHTRIIWDADW----AP--------LEFGNV----FVTASRDK-----TVKVWR
   WD14  691-733    -D-------Y-----VL---EASIKHTKAVTAISI----HD------SMIREKIL----ISVGLENG-----EIYLYS
   WD15  734-784    YTLGKFELIT-----QL---NEDITPADKITRLRW----SH----------LKRNGKLFLGVGSSDL-----STRIYS

   WD40 Template    TG-------E-----CL---RTLSGHTSGVTSVSF----SP----------DGKR----LVSGSEDG-----TIKVWD