Input parameters:

  Query = YGR225W (Len=593)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YGR225W, Len=593):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MATPHLYHRYNSKSSNKNINSSGNSTEVDRFIPKSVSRNAYKSIPMLNGFDISYSELCEKSPSPERLSSPEFFNELRNTG 80  
WD40-rpts                                                                                      

Query       81 HYESISTTNEFSMSSISSSSESQVTRSGSARASRNDYSKLTKEQKDHRKNIAHSLGFQLPDRVFTFETTSAEILEKNKAI 160 
WD40-rpts                                                                                      

Query      161 KNCFGPGSCAEIRSTFDFSTLSPDVARYYIANSNARSASPQRQIQRPAKRVKSHIPYRVLDAPCLRNDFYSNLISWSRTT 240 
WD40-rpts                                                               (________________WD 1__

Query      241 NNVLVGLGCSVYIWSEKEGAVSILDHQYLSEKRDLVTCVSFCPYNTYFIVGTKFGRILLYDQKEFFHSSNTNEKEPVFVF 320 
WD40-rpts      ______________)(____________________WD 2____________________)     (_____________

Query      321 QTESFKGICCLEWFKPGEICKFYVGEENGNVSLFEIKSLHFPIKNWSKRQKLEDENLIGLKLHSTYQAQAQQVCGISLNE 400 
WD40-rpts      _________WD 3_____________________)                             (______________W

Query      401 HANLLAVGGNDNSCSLWDISDLDKPIKKFVLPHKAAVKAIAFCPWSKSLLATGGGSKDRCIKFWHTSTGTLLDEICTSGQ 480 
WD40-rpts      D 4______________)         (________________WD 5________________)(______________

Query      481 VTSLIWSLRHKQIVATFGFGDTKNPVLITLYSYPKLSKLLEVRSPNPLRVLSAVISPSSMAICVATNDETIRFYELWNDK 560 
WD40-rpts      _______WD 6____________________)    (_________________WD 7________________)     

Query      561 EEIINEIQESGIYGSNIIEYMEGIETTHNKRIR 593 
WD40-rpts                                       

7 WD40-repeats found in QUERY=YGR225W (Len=593):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1   218-255      3.45  257.16  0.02111       12.5%     31.78
  WD 2:  Seg  4   256-301      7.65  430.75  9.7e-05       32.5%     49.21
  WD 3:  Seg  8   307-355      5.96  360.74  0.00086       12.5%     53.11
  WD 4:  Seg 13   385-418      7.72  433.38  9.0e-05       20.0%     40.53
  WD 5:  Seg 16   428-465      6.16  369.26  0.00066       30.0%     35.91
  WD 6:  Seg 19   466-512      4.47  299.21  0.00577       22.5%     49.47
  WD 7:  Seg 23   517-555      7.91  441.34  7.0e-05       22.5%     52.34

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  218-255    RVL-------DAPCLR-NDFYSNLISWSRTTN--NVL---VGL-------GCSVYIWS
   WD 2  256-301    EKE-GAVSILDHQYLSEKRDLVTCVSFCPYNT--YFI---VGT------KFGRILLYD
   WD 3  307-355    HSSNTNEKEPVFVFQTESFKGICCLEWFKPGEICKFY---VGE------ENGNVSLFE
   WD 4  385-418    -------------TYQAQAQQVCGISLNEHAN--LLA---VGG------NDNSCSLWD
   WD 5  428-465    ------------KFVLPHKAAVKAIAFCPWSK--SLLATGGGS------KDRCIKFWH
   WD 6  466-512    TST------GTLLDEICTSGQVTSLIWSLRHK--QIV---ATFGFGDTKNPVLITLYS
   WD 7  517-555    -SK-------LLEVRSPNPLRVLSAVISPSSM--AIC---VAT------NDETIRFYE

   WD40 Template    TGE-------CLRTLSGHTSGVTSVSFSPDGK--RLV---SGS------EDGTIKVWD