Input parameters:

  Query = YHR186C (Len=1557)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YHR186C, Len=1557):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MPEIYGPQPLKPLNTVMRHGFEEQYQSDQLLQSLANDFIFYFDDKRHKTNGNPIPEEDKQRDVNRYYQPITDWKIMKDRQ 80  
WD40-rpts                                                                                      

Query       81 KTVSAALLLCLNLGVDPPDVMKTHPCARVEAWVDPLNFQDSKKAIEQIGKNLQAQYETLSLRTRYKQSLDPCVEDVKRFC 160 
WD40-rpts                                                                                      

Query      161 NSLRRTSKEDRILFHYNGHGVPKPTKSGEIWVFNRGYTQYIPVSLYDLQTWLGAPCIFVYDCNSAENILINFQKFVQKRI 240 
WD40-rpts                                                                                      

Query      241 KDDEEGNHDVAAPSPTSAYQDCFQLASCTSDELLLMSPELPADLFSCCLTCPIEISIRIFLMQSPLKDSKYKIFFENSTS 320 
WD40-rpts                                                                                      

Query      321 NQPFGDSKNSFKSKIPNVNIPGMLSDRRTPLGELNWIFTAITDTIAWTSLPRPLFKKLFRHDLMIAALFRNFLLAKRIMP 400 
WD40-rpts                                                                                      

Query      401 WYNCHPVSDPELPDSITTHPMWKSWDLAMDEVLTKIVIDLKNAPPATALESQMILQQQETLQNGGSSKSNAQDTKAGSIQ 480 
WD40-rpts                                                                                      

Query      481 TQSRFAVANLSTMSLVNNPALQSRKSISLQSSQQQLQQQQQQQQQFTGFFEQNLTAFELWLKYASNVRHPPEQLPIVLQV 560 
WD40-rpts                                                                                      

Query      561 LLSQVHRIRALVLLSRFLDLGPWAVYLSLSIGIFPYVLKLLQSPAPELKPILVFIWARIMSIDYKNTQSELIKEKGYMYF 640 
WD40-rpts                                                                                      

Query      641 VTVLVPDWGVNGMSATNGSAMINSGNPLTMTASQNINGPSSRYYERQQGNRTSNLGHNNLPFYHSNDTTDEQKAMAVFVL 720 
WD40-rpts                                                                                      

Query      721 ASFVRNFPLGQKNCFSLELVNKLCFYIDNSEIPLLRQWCVILLGLLFADNPLNRFVCMNTGAVEILLKSLKDPVPEVRTA 800 
WD40-rpts                                                                                      

Query      801 SIFALKHFISGFQDAEVILRLQQEFEEQYQQLHSQLQHLQNQSHLQQQQSQQQQQHLEQQQMKIEKQIRHCQVMQNQLEV 880 
WD40-rpts                                                                                      

Query      881 IDLRKLKRQEIGNLISILPLINDGSSLVRKELVVYFSHIVSRYSNFFIVVVFNDLLEEIKLLEKSDINTRNTSDKYSVSQ 960 
WD40-rpts                                                                                      

Query      961 GSIFYTVWKSLLILAEDPFLENKELSKQVIDYILLELSAHKELGGPFAVMEKFLLKRSSKAHQTGKFGFNSSQVQFVKSS 1040
WD40-rpts                                                                                      

Query     1041 LRSFSPNERVDNNAFKKEQQQHDPKISHPMRTSLAKLFQSLGFSESNSDSDTQSSNTSMKSHTSKKGPSGLYLLNGNNNI 1120
WD40-rpts                                                                                      

Query     1121 YPTAETPRFRKHTEPLQLPLNSSFLDYSREYFQEPQMKKQEADEPGSVEYNARLWRRNRNETIIQETQGEKKLSIYGNWS 1200
WD40-rpts                                                                                  (___

Query     1201 KKLISLNNKSQPKLMKFAQFEDQLITADDRSTITVFDWEKGKTLSKFSNGTPFGTKVTDLKLINEDDSALLLTGSSDGVI 1280
WD40-rpts      _______________WD 1_________________)   (___________________WD 2________________

Query     1281 KIYRDYQDVDTFKIVSAWRGLTDMLLTPRSTGLLTEWLQIRGSLLTTGDVKVIRVWDAHTETVEVDIPAKTSSLITSLTA 1360
WD40-rpts      ___)              (_________________WD 3________________)   (__________________W

Query     1361 DQLAGNIFVAGFADGSLRVYDRRLDPRDSMIRRWRAGNDKQGVWINNVHLQRGGYRELVSGATNGVVELWDIRSEDPVES 1440
WD40-rpts      D 4_________________)         (__________________WD 5_________________)         

Query     1441 FVDQNVTSQYGSQQKPTTMTCMQVHEHAPIIATGTKQIKIWTTSGDLLNSFKNSHNNGVTSTLAATGIPKSLSYSSTSDA 1520
WD40-rpts                                (_________________WD 6________________)   (___________

Query     1521 FLSSMAFHPHRMMIAATNSHDSIVNIYKCEDERIDYF 1557
WD40-rpts      ______WD 7_________________)         

7 WD40-repeats found in QUERY=YHR186C (Len=1557):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 14  1197-1237     6.04  364.24  0.00077       17.5%     48.79
  WD 2:  Seg 18  1241-1284     6.20  370.71  0.00063       35.0%     49.04
  WD 3:  Seg 23  1299-1337     4.83  314.18  0.00363       20.0%     42.01
  WD 4:  Seg 26  1341-1381     5.12  326.35  0.00249       27.5%     55.33
  WD 5:  Seg 30  1391-1431     7.04  405.43  0.00021       25.0%     42.97
  WD 6:  Seg 35  1467-1505     3.65  265.26  0.01646        7.5%     15.01
  WD 7:  Seg 38  1509-1548     5.95  360.33  0.00087       17.5%     43.67

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1 1197-1237   GNWSKKLISLNNKSQ-PKLMK-----FAQ-FEDQ-L-ITADDRSTITVFD
   WD 2 1241-1284   -GKTLS-KFSNGTPF-GTKVTDLKLINED-DSAL-L-LTGSSDGVIKIYR
   WD 3 1299-1337   RGLTDM-LLTPRSTG-LL-TE-----WLQ-IRGS-L-LTTGDVKVIRVWD
   WD 4 1341-1381   -ETVEV-DIPAKTSSLITSLT-----ADQLAGNI-F-VAGFADGSLRVYD
   WD 5 1391-1431   IRRWRA-GNDKQGVW-INNVH-----LQR-GGYREL-VSGATNGVVELWD
   WD 6 1467-1505   -HAPII-ATGTKQIK-IWTTS-----GDL-LNSF-K-NSHNNGVTSTLAA
   WD 7 1509-1548   -PKSLS-YSSTSDAF-LSSMA-----FHP-HRMM-IAATNSHDSIVNIYK

   WD40 Template    TGECLR-TLSGHTSG-VTSVS-----FSP-DGKR-L-VSGSEDGTIKVWD