Input parameters:

  Query = YIR012W (Len=431)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YIR012W, Len=431):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEPQEEFITTEEVEQEIVPTVEVEQDVPVDIEGENDDDDEMMNDDEEALEVDMSNNSLTYFDKHTDSVFAIGHHPNLPLV 80  
WD40-rpts         (_________________WD 1_________________)           (_________________WD 2____

Query       81 CTGGGDNLAHLWTSHSQPPKFAGTLTGYGESVISCSFTSEGGFLVTADMSGKVLVHMGQKGGAQWKLASQMQEVEEIVWL 160 
WD40-rpts      ____________)     (_________________WD 3________________)   (___________________

Query      161 KTHPTIARTFAFGATDGSVWCYQINEQDGSLEQLMSGFVHQQDCSMGEFINTDKGENTLELVTCSLDSTIVAWNCFTGQQ 240 
WD40-rpts      WD 4__________________)     (____________________WD 5____________________)      

Query      241 LFKITQAEIKGLEAPWISLSLAPETLTKGNSGVVACGSNNGLLAVINCNNGGAILHLSTVIELKPEQDELDASIESISWS 320 
WD40-rpts           (__________________WD 6__________________)             (_________________WD

Query      321 SKFSLMAIGLVCGEILLYDTSAWRVRHKFVLEDSVTKLMFDNDDLFASCINGKVYQFNARTGQEKFVCVGHNMGVLDFIL 400 
WD40-rpts       7________________)(_________________WD 8________________)   (__________________

Query      401 LHPVANTGTEQKRKVITAGDEGVSLVFEVPN 431 
WD40-rpts      ___WD 9____________________)   

9 WD40-repeats found in QUERY=YIR012W (Len=431):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     4-43       8.00  445.32  6.2e-05       17.5%     25.90
  WD 2:  Seg  5    55-93       9.07  489.20  1.6e-05       20.0%     53.52
  WD 3:  Seg  9    99-137      8.82  479.18  2.2e-05       30.0%     55.89
  WD 4:  Seg 13   141-183      7.08  407.08  0.00020       15.0%     51.27
  WD 5:  Seg 17   189-234      6.42  379.89  0.00047       25.0%     46.57
  WD 6:  Seg 22   246-287      6.34  376.55  0.00052       20.0%     47.14
  WD 7:  Seg 26   301-339      8.27  456.47  4.4e-05       20.0%     45.58
  WD 8:  Seg 29   340-378      5.97  361.37  0.00084       20.0%     54.13
  WD 9:  Seg 33   382-428      7.28  415.54  0.00016       17.5%     50.09

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    4-43     QEE-FITTEEVE-------QEIVPTV--------EVEQD------VPVDIEGENDDDDEMMN
   WD 2   55-93     -NN-SLTYFDKH-------TDSVFAI--------GHHPN------LPLVCTGGGDNLAHLWT
   WD 3   99-137    -PK-FAGTLTGY-------GESVISC--------SFTSE------GGFLVTADMSGKVLVHM
   WD 4  141-183    -GG-AQWKLASQ-------MQEVEEI--------VWLKT--HPTIARTFAFGATDGSVWCYQ
   WD 5  189-234    -GS-LEQLMSGFVHQQDCSMGEFINT--------DKGEN------TLELVTCSLDSTIVAWN
   WD 6  246-287    -----QAEIKGL-------EAPWISL--------SLAPETLTKGNSGVVACGSNNGLLAVIN
   WD 7  301-339    -IE-LKPEQDEL-------DASIESI--------SWSSK------FSLMAIGLVCGEILLYD
   WD 8  340-378    TSAWRVRHKFVL-------EDSVTKL--------MFDND------D--LFASCINGKVYQFN
   WD 9  382-428    -GQ-EKFVCVGH-------NMGVLDFILLHPVANTGTEQ------KRKVITAGDEGVSLVFE

   WD40 Template    TGE-CLRTLSGH-------TSGVTSV--------SFSPD------GKRLVSGSEDGTIKVWD