Input parameters:

  Query = YJL069C (Len=594)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YJL069C, Len=594):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTMATTAMNVSVPPPDEEEQLLAKFVFGDTTDLQENLAKFNADFIFNEQEMDVEDQEDEGSESDNSEEDEAQNGELDHVN 80  
WD40-rpts                                                                                      

Query       81 NDQLFFVDDGGNEDSQDKNEDTMDVDDEDDSSSDDYSEDSEEAAWIDSDDEKIKVPILVTNKTKKLRTSYNESKINGVHY 160 
WD40-rpts                                                                                      

Query      161 INRLRSQFEKIYPRPKWVDDESDSELDDEEDDEEEGSNNVINGDINALTKILSTTYNYKDTLSNSKLLPPKKLDIVRLKD 240 
WD40-rpts                                                                                    (_

Query      241 ANASHPSHSAIQSLSFHPSKPLLLTGGYDKTLRIYHIDGKTNHLVTSLHLVGSPIQTCTFYTSLSNQNQQNIFTAGRRRY 320 
WD40-rpts      _______________WD 1________________)     (___________________WD 2_______________

Query      321 MHSWDLSLENLTHSQTAKIEKFSRLYGHESTQRSFENFKVAHLQNSQTNSVHGIVLLQGNNGWINILHSTSGLWLMGCKI 400 
WD40-rpts      ____)   (_________________WD 3________________) (_________________WD 4__________

Query      401 EGVITDFCIDYQPISRGKFRTILIAVNAYGEVWEFDLNKNGHVIRRWKDQGGVGITKIQVGGGTTTTCPALQISKIKQNR 480 
WD40-rpts      _______)                                        (_____________________WD 5______

Query      481 WLAVGSESGFVNLYDRNNAMTSSTPTPVAALDQLTTTISNLQFSPDGQILCMASRAVKDALRLVHLPSCSVFSNWPTSGT 560 
WD40-rpts      ______________)         (__________________WD 6_________________)(______________

Query      561 PLGKVTSVAFSPSGGLLAVGNEQGKVRLWKLNHY 594 
WD40-rpts      ______WD 7___________________)    

7 WD40-repeats found in QUERY=YJL069C (Len=594):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3   239-276      7.44  422.03  0.00013       22.5%     42.27
  WD 2:  Seg  6   282-325      5.21  329.84  0.00223       12.5%     51.61
  WD 3:  Seg 10   329-367      5.18  328.77  0.00231        2.5%     31.22
  WD 4:  Seg 13   369-408      3.13  244.05  0.03155       17.5%     50.96
  WD 5:  Seg 20   449-495      7.02  404.64  0.00022       20.0%     48.02
  WD 6:  Seg 24   505-545      5.72  350.89  0.00116       22.5%     46.92
  WD 7:  Seg 27   546-590      7.84  438.65  7.6e-05       37.5%     40.80

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  239-276    --KD-----AN-------ASHPSHSAIQSLSF-----HPSKPLLLTGGY--DKTLRIYH
   WD 2  282-325    -NHL-----VT-------SLHLVGSPIQTCTFYTSLSNQNQQNIFTAGR--RRYMHSWD
   WD 3  329-367    -ENL-----TH-------SQTAKIEKFSRLYG-----HESTQRSFENFK--VAHLQNSQ
   WD 4  369-408    NSVH-----GI-------VLLQGNNGWINILH-----STSGLWLMGCKI--EGVITDFC
   WD 5  449-495    DQGG-----VGITKIQVGGGTTTTCPALQISK-----IKQNRWLAVGSE--SGFVNLYD
   WD 6  505-545    -PTP-----VA-------ALDQLTTTISNLQF-----SPDGQILCMASRAVKDALRLVH
   WD 7  546-590    LPSCSVFSNWP-------TSGTPLGKVTSVAF-----SPSGGLLAVGNE--QGKVRLWK

   WD40 Template    TGEC-----LR-------TLSGHTSGVTSVSF-----SPDGKRLVSGSE--DGTIKVWD