Input parameters:

  Query = YJR033C (Len=1357)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YJR033C, Len=1357):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSLNFLPGRPNATPQTACQATWQNHTIFAYCSGNNLIILTNKFTRLQTIYTQSDCTAVDINSQNGFIALSFHNRVLIYKP 80  
WD40-rpts                                              (_________________WD 1________________) 

Query       81 IHQIMQNPKWTQCCQLFHDDTPVNCLRWSSDNELAIGSDFLSFWKIKDNFGVYQPILQWNQKQPKPVYNVIISQDSQLIV 160 
WD40-rpts               (_________________WD 2________________)     (_________________WD 3_____

Query      161 SIGKYDCNAKLWKRVSIVGEQAIFNLTMLPHPKPITAMRWKKEPDQVSKNNTASHALYTLCEDKVLRIWSCFEMEKNHTV 240 
WD40-rpts      ____________)        (______________________WD 4_____________________)          

Query      241 QIWGEVPLSPTQKFCVIIDNWIIRQTLSVKDSEIFDISDSDIVILGSMTGEMEVLALNNLSQDPPKPMTKKTISHKKVKK 320 
WD40-rpts                                                                                      

Query      321 ATMLNDTRYLYLPEIQPYDNVKGKLSFLVHDLQGVIRHLLIDILQLINNKTEDLSAALEHKFTGHNKSVQKLVRSSDGEA 400 
WD40-rpts                                                             (_________________WD 5___

Query      401 LLTTSRFSENGVWYPQKLNHGVSLRLQNTIQTESPIKFAVVHELGKQVICLLENGALQAWECPTNRKEDSEQKQSYLRVE 480 
WD40-rpts      _____________)(_____________________WD 6____________________)                   

Query      481 TRLKEEKKIHPIVMLNTPEPKHSHERHFTALIFSDGSIKAFEVSLTRGIFEVKSDSLDIDGDDIYKISIIDPVHQTFVSN 560 
WD40-rpts                                                                                      

Query      561 RPLISLITKKGLTRTYKAIVNYNDRHVQWIKACEINTGIMNCTCIRGSSTGKLCIVNSTGKVMSLWDLNRGVLEYEETFH 640 
WD40-rpts                                  (_________________WD 7________________)             

Query      641 NPIEDIDWTSTEYGQSIVSIGFTGYALLYTQLRYDYTNNTPSYLPIEKIDITAHTAHNIGDSVWMKNGTFVVASGNQFYI 720 
WD40-rpts                                                                                      

Query      721 KDKSLDLTDPFTYQSIGSRKILSNDILHLSSVLNGPLPVYHPQFLIQAIYANKLQLVKELLLRLFLALRKLDFESQDVSN 800 
WD40-rpts                                                                                      

Query      801 LDSNLGMDPLKYFIAKDRDYPVESFPDPYPCFNKTVSLALTEQLTKTTLPYLTRHQQITLITVIEAVDEVTKNENIVDYN 880 
WD40-rpts                                                                                      

Query      881 GVRFLLGVKLFLSHKNIQKSILMRDVSWALHSDNKEILLSSIDRHITSWNRAREYRIAYWIKEQDLVKKFEDIAKYEFSK 960 
WD40-rpts                                                                                      

Query      961 DDKRDPSRCAIFYLALKKKQILLSLWKMAIGHPEQQKMVRFISNDFTVPRWRTAALKNAFVLLSKHRYMDAAVFFLLTDS 1040
WD40-rpts                                                                                      

Query     1041 LKDCVNVLCKQVHDMDLAIGVCRVYEGDNGPVLGELLTAQMLPETIKENDRWKASFIYWKLRKQEVAIKALLTAPIDLEN 1120
WD40-rpts                                                                                      

Query     1121 NSSIVDKEVCVNRSFLVEDPALLYLYNHLRNRNLKYFIGSLNVEAKIECTLILRVTDILCRMGCNYLAVSLVKNWKFIER 1200
WD40-rpts                                                                                      

Query     1201 NSIPVQKLLKSPTKDRAYSAIGAMASEPISTARMRPSLFDKFGSPSASDIESPNPKLPNSLLDDFLQPPPNSTSSNSLAQ 1280
WD40-rpts                                                                                      

Query     1281 SSSSAPRSILDEFVSPSYSQHKENLTPKAPNDSVGETDNSENRKDKLSKDILDDLSSQKPQKPKKSAITKNLLDDFV 1357
WD40-rpts                                                                                   

7 WD40-repeats found in QUERY=YJR033C (Len=1357):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4    41-79       3.14  244.46  0.03115       10.0%     48.60
  WD 2:  Seg  8    90-128      3.83  272.71  0.01308       15.0%     37.01
  WD 3:  Seg 12   134-173      4.68  307.84  0.00441       27.5%     41.02
  WD 4:  Seg 16   182-230      3.93  276.99  0.01146       17.5%     52.81
  WD 5:  Seg 29   376-414      6.36  377.56  0.00051       25.0%     45.17
  WD 6:  Seg 33   415-461      5.13  326.48  0.00248       17.5%     47.04
  WD 7:  Seg 46   589-627      4.33  293.33  0.00692       17.5%     34.71

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   41-79     NKFT-------RLQTIYTQSDCTAVDI----------NSQNGFIAL--SFHNRVLIYK
   WD 2   90-128    -WTQ-------CCQLFHDDTPVNCLRW----------SSDNELAIG-SDFLSFWKIKD
   WD 3  134-173    -QPI-------LQWNQKQPKPVYNVII----------SQDSQLIVSIGKYDCNAKLWK
   WD 4  182-230    -AIF-------NLTMLPHPKPITAMRWKKEPDQVSKNNTASHALYT-LCEDKVLRIWS
   WD 5  376-414    -AAL-------EHKFTGHNKSVQKLVR----------SSDGEALLT-TSRFSENGVWY
   WD 6  415-461    PQKLNHGVSLRLQNTIQTESPIKFAVV----------HELGKQVIC-LLENGALQAWE
   WD 7  589-627    -WIK-------ACEINTGIMNCTCIRG----------SSTGKLCIV-NSTGKVMSLWD

   WD40 Template    TGEC-------LRTLSGHTSGVTSVSF----------SPDGKRLVS-GSEDGTIKVWD