Input parameters:

  Query = YKL018W (Len=329)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YKL018W, Len=329):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTTVSINKPNLLKFKHVKSFQPQEKDCGPVTSLNFDDNGQFLLTSSSNDTMQLYSATNCKFLDTIASKKYGCHSAIFTHA 80  
WD40-rpts             (_____________________WD 1_____________________)   (__________________WD 

Query       81 QNECIYSSTMKNFDIKYLNLETNQYLRYFSGHGALVNDLKMNPVNDTFLSSSYDESVRLWDLKISKPQVIIPSLVPNCIA 160 
WD40-rpts      2_________________)   (_________________WD 3________________)(__________________

Query      161 YDPSGLVFALGNPENFEIGLYNLKKIQEGPFLIIKINDATFSQWNKLEFSNNGKYLLVGSSIGKHLIFDAFTGQQLFELI 240 
WD40-rpts      WD 4_________________)(_____________________WD 5____________________)   (_______

Query      241 GTRAFPMREFLDSGSACFTPDGEFVLGTDYDGRIAIWNHSDSISNKVLRPQGFIPCVSHETCPRSIAFNPKYSMFVTADE 320 
WD40-rpts      _____________WD 6____________________)           (_________________WD 7_________

Query      321 TVDFYVYDE 329 
WD40-rpts      _______) 

7 WD40-repeats found in QUERY=YKL018W (Len=329):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2     8-55       8.32  458.48  4.1e-05       22.5%     55.87
  WD 2:  Seg  6    59-99       7.21  412.66  0.00017       20.0%     51.88
  WD 3:  Seg 10   103-141      9.86  521.77  5.8e-06       30.0%     57.61
  WD 4:  Seg 14   142-182      6.23  371.89  0.00061       10.0%     49.14
  WD 5:  Seg 18   183-229      8.22  454.21  4.7e-05       25.0%     56.32
  WD 6:  Seg 22   233-278      8.12  450.02  5.4e-05       32.5%     53.00
  WD 7:  Seg 26   290-328      7.84  438.71  7.6e-05       20.0%     36.27

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    8-55     KPN-------LLKFKHVKSFQPQEKDCGPVT-------SLNFDDNGQF--LLTSSSND-TMQLYS
   WD 2   59-99     -CK-------FLD--------TIASKKYGCH-------SAIFTHAQNECIYSSTMKNF-DIKYLN
   WD 3  103-141    -NQ-------YLR--------YFSGHGALVN-------DLKMNPVNDT--FLSSSYDE-SVRLWD
   WD 4  142-182    LKI-------SKP--------QVIIPSLVPN-------CIAYDPSGLV--FALGNPENFEIGLYN
   WD 5  183-229    LKKIQEGPFLIIK--------INDATFSQWN-------KLEFSNNGKY--LLVGSSIG-KHLIFD
   WD 6  233-278    -GQ-------QLF--------ELIGTRAFPMREFLDSGSACFTPDGEF--VLGTDYDG-RIAIWN
   WD 7  290-328    -PQ-------GFI--------PCVSHETCPR-------SIAFNPKYSM--FVTADETV-DFYVYD

   WD40 Template    TGE-------CLR--------TLSGHTSGVT-------SVSFSPDGKR--LVSGSEDG-TIKVWD