Input parameters:

  Query = YLL036C (Len=503)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YLL036C, Len=503):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVEIVPSAQQASLTESTNSATLKANYSIPNL 80  
WD40-rpts                                                                                      

Query       81 LTSLQNEWDAIMLENFKLRSTLDSLTKKLSTVMYERDAAKLVAAQLLMEKNEDSKDLPKSSQQAVAITREEFLQGLLQSS 160 
WD40-rpts                                                                                      

Query      161 RDFVARGKLKAPKWPILKNLELLQAQNYSRNIKTFPYKELNKSMYYDKWVCMCRCEDGALHFTQLKDSKTITTITTPNPR 240 
WD40-rpts                              (_________________WD 1_________________)   (____________

Query      241 TGGEHPAIISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDS 320 
WD40-rpts      _______WD 2__________________)   (__________________WD 3__________________)  (__

Query      321 QYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQTVVCF 400 
WD40-rpts      ________________WD 4_________________)(___________________WD 5__________________

Query      401 DLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTKDEESALCLQSDTADFTDMDVV 480 
WD40-rpts      )        (_________________WD 6_________________)    (_________________WD 7_____

Query      481 CGDGGIAAILKTNDSFNIVALTP 503 
WD40-rpts      ___________)           

7 WD40-repeats found in QUERY=YLL036C (Len=503):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3   185-224      7.29  415.78  0.00015       15.0%     38.43
  WD 2:  Seg  7   228-270      4.44  297.87  0.00601       12.5%     47.23
  WD 3:  Seg 11   274-315      3.71  267.87  0.01519       12.5%     50.72
  WD 4:  Seg 15   318-358      7.29  415.81  0.00015       17.5%     58.00
  WD 5:  Seg 19   359-401      5.77  353.06  0.00109       20.0%     44.13
  WD 6:  Seg 22   410-449      5.34  335.30  0.00188       12.5%     54.21
  WD 7:  Seg 26   454-492      4.82  313.69  0.00368        7.5%     19.41

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  185-224    AQ-N----YSRNIK-TFPYKELN----KSMYY--DKWVCMCRCEDGA-LHFTQ
   WD 2  228-270    -S-K----TITTIT-TPNPRTGGEHPAIISRG--PCNRLLLLYPGNQ-ITILD
   WD 3  274-315    -N-K----VLREIEVDSANEIIY----MYGHNEVNTEYFIWADNRGT-IGFQS
   WD 4  318-358    DDSQ----YIVHSA-KSDVEYSS----GVLHK--DSLLLALYSPDGI-LDVYN
   WD 5  359-401    LS-SPDQASSRFPV-DEEAKIKE----VKFAD--NGYWMVVEC-DQT-VVCFD
   WD 6  410-449    -A-Y----PTYTIP-EFKTGTVT----YDIDD--SGKNMIAYSNESNSLTIYK
   WD 7  454-492    -T-K----NWTKDE-ESALCLQS----DTADF--TDMDVVCGDGGIA-AILKT

   WD40 Template    TG-E----CLRTLS-GHTSGVTS----VSFSP--DGKRLVSGSEDGT-IKVWD