Input parameters:

  Query = YLR055C (Len=602)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YLR055C, Len=602):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDEVDDILINNQVVDDEEDDEEMLSGLENDSKQDLEGNDDGGEDEEDDDDDDEDDDDDEDEREDDDEQEDDDGEDDAARM 80  
WD40-rpts                                                                                      

Query       81 DKTATPTNEHQHDEQKAAAAGAGGAGDSGDAVTKIGSEDVKLSDVDGGVGSREASSSTHEASANGEVYEYYKHMLNAAQI 160 
WD40-rpts                                                                                    (_

Query      161 ADSYNIYPTAAIPIQTHVNALAVSRGLKYLFLGGSDGYIRKYDLLNTLEGKLSLTILQKHSLAESIQNAGILQSYWENEI 240 
WD40-rpts      ___________________WD 1___________________)  (__________________WD 2____________

Query      241 PQKKSEMKLSANKTDYEPKVSPVHSLEVQSECLFILSGLQNGGITMQGVRYMEGSIAHYFKGRNGHTQIVNILRLNGQED 320 
WD40-rpts      _____)   (_________________WD 3________________)        (_________________WD 4__

Query      321 RFLSGSWDKRLLEWDLQTGDIVNEFKKSRSELSSLEMRPLYSSVDVSGNVNSGKENENADDDMDSLFGDEDEDEKQDAGN 400 
WD40-rpts      ______________)   (_________________WD 5________________)(_____________WD 6_____

Query      401 EPVETGDGSNGEENKEQISEESLNIVYDESVFMTSGLNGSVHIWDRRMTQSPALSLERGAGVPPWCLSACWGVDGDHVYA 480 
WD40-rpts      _______)                                            (_________________WD 7______

Query      481 GRRNACVEQFDLKMPSKPIHNLKLPSISGPVSCVKAMPNNKHLLCASRDNIRLYNVEIAVDASNSTTKSSKVPFLIVPGH 560 
WD40-rpts      __________)(___________________WD 8___________________)(_______________________W

Query      561 HGGIISNLYLDPTSRFIISTSGNRGWQGNSTDTTLIYDIDLE 602 
WD40-rpts      D 9_______________________)               

9 WD40-repeats found in QUERY=YLR055C (Len=602):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1   159-203      7.25  414.32  0.00016       22.5%     42.22
  WD 2:  Seg  4   206-246      4.62  305.38  0.00476       12.5%     28.69
  WD 3:  Seg  7   250-288      7.85  439.10  7.5e-05       17.5%     45.14
  WD 4:  Seg 10   297-335      8.89  482.00  2.0e-05       27.5%     45.50
  WD 5:  Seg 14   339-377      7.02  404.51  0.00022       12.5%     26.89
  WD 6:  Seg 17   378-408      4.35  294.48  0.00668        5.0%     -5.08
  WD 7:  Seg 20   453-491      6.47  381.72  0.00045       17.5%     44.38
  WD 8:  Seg 24   492-535      6.35  377.13  0.00051       22.5%     44.30
  WD 9:  Seg 27   536-587      3.46  257.60  0.02083       15.0%     39.04

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  159-203    QI---------------ADSY-----NIYPTAAIPIQTHVNALAVSRGLKYLFLGGSDGYIRKYD
   WD 2  206-246    NT--------------LEGKL-----SL-----TILQKHSLAESIQNAGILQSYWENEIPQKKSE
   WD 3  250-288    -S---------------ANKT-----DY-----EPKVSPVHSLEVQSECLFILSGLQNGGITMQG
   WD 4  297-335    -A---------------HYFK-----GR-----NGHTQIVNILRLNGQEDRFLSGSWDKRLLEWD
   WD 5  339-377    -G---------------DIVN-----EF-----KKSRSELSSLEMRPLYSSVDVSGNVNSGKENE
   WD 6  378-408    ----------------------------------NADDDMDSLFGDEDEDEKQDAGNEPVETGDG
   WD 7  453-491    -A---------------LSLE-----RG-----AGVPPWCLSACWGVDGDHVYAGRRNACVEQFD
   WD 8  492-535    LK---------------MPSKPIHNLKL-----PSISGPVSCVKAMPNNKHLLCASRD-NIRLYN
   WD 9  536-587    VEIAVDASNSTTKSSKVPFLI-----VP-----GHHGGIISNLYLDPTSRFIISTSGN---RGWQ

   WD40 Template    TG---------------ECLR-----TL-----SGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD