Input parameters:

  Query = YLR129W (Len=943)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YLR129W, Len=943):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MVKSYQRFEQAAAFGVIASNANCVWIPASSGNSNGSGPGQLITSALEDVNIWDIKTGDLVSKLSDGLPPGASDARGAKPA 80  
WD40-rpts               (___________________WD 1___________________)          (________________

Query       81 ECTYLEAHKDTDLLAVGYADGVIKVWDLMSKTVLLNFNGHKAAITLLQFDGTGTRLISGSKDSNIIVWDLVGEVGLYKLR 160 
WD40-rpts      ___WD 2___________________)   (_________________WD 3________________)   (_______

Query      161 SHKDSITGFWCQGEDWLISTSKDGMIKLWDLKTHQCIETHIAHTGECWGLAVKDDLLITTGTDSQVKIWKLDIENDKMGG 240 
WD40-rpts      _________WD 4________________)   (________________WD 5_______________)          

Query      241 KLTEMGIFEKQSKQRGLKIEFITNSSDKTSFFYIQNADKTIETFRIRKEEEIARGLKKREKRLKEKGLTEEEIAKSIKES 320 
WD40-rpts           (_________________WD 6_________________)                                   

Query      321 YSSFILHPFQTIRSLYKIKSASWTTVSSSKLELVLTTSSNTIEYYSIPYEKRDPTSPAPLKTHTIELQGQRTDVRSIDIS 400 
WD40-rpts              (________________WD 7________________)                    (_____________

Query      401 DDNKLLATASNGSLKIWNIKTHKCIRTFECGYALTCKFLPGGLLVILGTRNGELQLFDLASSSLLDTIEDAHDAAIWSLD 480 
WD40-rpts      WD 8_____________)(_________________WD 9_________________)(___________________WD

Query      481 LTSDGKRLVTGSADKTVKFWDFKVENSLVPGTKNKFLPVLKLHHDTTLELTDDILCVRVSPDDRYLAISLLDNTVKVFFL 560 
WD40-rpts      10__________________)                      (_______________WD11_______________) 

Query      561 DSMKFYLSLYGHKLPVLSIDISFDSKMIITSSADKNIKIWGLDFGDCHKSLFAHQDSIMNVKFLPQSHNFFSCSKDAVVK 640 
WD40-rpts        (_________________WD12________________)   (_________________WD13______________

Query      641 YWDGEKFECIQKLYAHQSEVWALAVATDGGFVVSSSHDHSIRIWEETEDQVFLEEEKEKELEEQYEDTLLTSLEEGNGDD 720 
WD40-rpts      __)   (_________________WD14________________)                                   

Query      721 AFKADASGEGVEDEASGVHKQTLESLKAGERLMEALDLGIAEIEGLEAYNRDMKLWQRKKLGEAPIKPQGNAVLIAVNKT 800 
WD40-rpts                      (__________________WD15_________________)   (___________________

Query      801 PEQYIMDTLLRIRMSQLEDALMVMPFSYVLKFLKFIDTVMQNKTLLHSHLPLICKNLFFIIKFNHKELVSQKNEELKLQI 880 
WD40-rpts      _WD16___________________)                                                       

Query      881 NRVKTELRSALKSTEDDLGFNVQGLKFVKQQWNLRHNYEFVDEYDQQEKESNSARKRVFGTVI 943 
WD40-rpts                                                                     

16 WD40-repeats found in QUERY=YLR129W (Len=943):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    10-53       5.09  324.89  0.00260       20.0%     46.08
  WD 2:  Seg  7    64-107      7.19  411.51  0.00018       27.5%     42.08
  WD 3:  Seg 10   111-149      9.54  508.79  8.6e-06       40.0%     57.98
  WD 4:  Seg 14   153-190      7.07  406.68  0.00021       32.5%     58.73
  WD 5:  Seg 18   194-230      6.46  381.39  0.00045       22.5%     56.40
  WD 6:  Seg 22   246-285      4.34  294.11  0.00675       15.0%     51.14
  WD 7:  Seg 29   329-366      4.65  306.74  0.00457       17.5%     50.73
  WD 8:  Seg 34   387-418      6.30  374.87  0.00055       30.0%     45.14
  WD 9:  Seg 37   419-458      7.03  405.26  0.00021       15.0%     51.76
  WD10:  Seg 41   459-501      8.56  468.13  3.1e-05       37.5%     48.56
  WD11:  Seg 46   524-559      6.39  378.82  0.00049       27.5%     47.82
  WD12:  Seg 49   563-601      9.06  489.11  1.6e-05       32.5%     57.06
  WD13:  Seg 53   605-643      9.24  496.23  1.3e-05       32.5%     55.15
  WD14:  Seg 57   647-685      9.27  497.43  1.2e-05       35.0%     55.44
  WD15:  Seg 66   737-777      4.52  301.54  0.00537       17.5%     46.06
  WD16:  Seg 70   781-825      3.46  257.46  0.02092        7.5%     30.47

Multiple sequence alignment of 16 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   10-53     QAA----AFGVIASNANCVWIPASSGNSNGSGPG--QLITSALED--V------NIWD
   WD 2   64-107    SDGLPPGASDARGAKPAECTYLE------AHKDT--DLLAVGYADGVI------KVWD
   WD 3  111-149    -KT----VLLNFNGHKAAITLLQ------FDGTG--TRLISGSKDSNI------IVWD
   WD 4  153-190    -EV----GLYKLRSHKDSITGFW------CQGED---WLISTSKDGMI------KLWD
   WD 5  194-230    -HQ----CIETHIAHTGECWGLA------VKDD----LLITTGTDSQV------KIWK
   WD 6  246-285    -GI----FEKQSKQRGLKIEFIT------NSSDK-TSFFYIQNADKTI------ETFR
   WD 7  329-366    -FQ----TIRSLYKIKSASWTTV------SSSKL--ELVLTTS-SNTI------EYYS
   WD 8  387-418    -----------LQGQRTDVRSID------ISDDN--KLLATAS-NGSL------KIWN
   WD 9  419-458    IKT----HKCIRTFECGYALTCK------FLPGG--LLVILGTRNGEL------QLFD
   WD10  459-501    LAS-SSLLDTIEDAHDAAIWSLD------LTSDG--KRLVTGSADKTV------KFWD
   WD11  524-559    HDT----TLE----LTDDILCVR------VSPDD--RYLAISLLDNTV------KVFF
   WD12  563-601    -MK----FYLSLYGHKLPVLSID------ISFDS--KMIITSSADKNI------KIWG
   WD13  605-643    -GD----CHKSLFAHQDSIMNVK------FLPQS--HNFFSCSKDAVV------KYWD
   WD14  647-685    -FE----CIQKLYAHQSEVWALA------VATDG--GFVVSSSHDHSI------RIWE
   WD15  737-777    -GV----HKQTLESLKAGERLME------ALDLGIAEIEGLEAYNRDM------KLWQ
   WD16  781-825    -LG----EAPIKPQGNAVLIAVN------KTPEQ--YIMDTLLRIRMSQLEDALMVMP

   WD40 Template    TGE----CLRTLSGHTSGVTSVS------FSPDG--KRLVSGSEDGTI------KVWD