Input parameters:

  Query = YLR222C (Len=817)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YLR222C, Len=817):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDLKTSYKGISLNPIYAGSSAVATVSENGKILATPVLDEINIIDLTPGSRKILHKISNEDEQEITALKLTPDGQYLTYVS 80  
WD40-rpts           (_________________WD 1________________)(____________________WD 2___________

Query       81 QAQLLKIFHLKTGKVVRSMKISSPSYILDADSTSTLLAVGGTDGSIIVVDIENGYITHSFKGHGGTISSLKFYGQLNSKI 160 
WD40-rpts      ________)   (________________WD 3________________)   (___________________WD 4___

Query      161 WLLASGDTNGMVKVWDLVKRKCLHTLQEHTSAVRGLDIIEVPDNDEPSLNLLSGGRDDIINLWDFNMKKKCKLLKTLPVN 240 
WD40-rpts      _______________)   (____________________WD 5___________________)   (____________

Query      241 QQVESCGFLKDGDGKRIIYTAGGDAIFQLIDSESGSVLKRTNKPIEELFIIGVLPILSNSQMFLVLSDQTLQLINVEEDL 320 
WD40-rpts      _______WD 6___________________)   (__________________WD 7_________________)     

Query      321 KNDEDTIQVTSSIAGNHGIIADMRYVGPELNKLALATNSPSLRIIPVPDLSGPEASLPLDVEIYEGHEDLLNSLDATEDG 400 
WD40-rpts            (_________________WD 8_________________)           (_________________WD 9_

Query      401 LWIATASKDNTAIVWRYNENSCKFDIYAKYIGHSAAVTAVGLPNIVSKGYPEFLLTASNDLTIKKWIIPKPTASMDVQII 480 
WD40-rpts      _______________)(_______________________WD10______________________)             

Query      481 KVSEYTRHAHEKDINALSVSPNDSIFATASYDKTCKIWNLENGELEATLANHKRGLWDVSFCQYDKLLATSSGDKTVKIW 560 
WD40-rpts       (________________WD11________________)   (_________________WD12________________

Query      561 SLDTFSVMKTLEGHTNAVQRCSFINKQKQLISCGADGLIKIWDCSSGECLKTLDGHNNRLWALSTMNDGDMIVSADADGV 640 
WD40-rpts      )   (_________________WD13________________)   (_________________WD14____________

Query      641 FQFWKDCTEQEIEEEQEKAKLQVEQEQSLQNYMSKGDWTNAFLLAMTLDHPMRLFNVLKRALGESRSRQDTEEGKIEVIF 720 
WD40-rpts      ____)             (________________WD15________________)(_______________________

Query      721 NEELDQAISILNDEQLILLMKRCRDWNTNAKTHTIAQRTIRCILMHHNIAKLSEIPGMVKIVDAIIPYTQRHFTRVDNLV 800 
WD40-rpts      WD16______________________)                                                     

Query      801 EQSYILDYALVEMDKLF 817 
WD40-rpts                       

16 WD40-repeats found in QUERY=YLR222C (Len=817):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     6-44       3.52  260.01  0.01934       17.5%     50.65
  WD 2:  Seg  5    45-89       6.69  391.13  0.00033       17.5%     57.63
  WD 3:  Seg  9    93-130      6.46  381.32  0.00045       25.0%     56.78
  WD 4:  Seg 13   134-176      7.55  426.69  0.00011       32.5%     59.04
  WD 5:  Seg 17   180-224      7.62  429.26  0.00010       37.5%     58.64
  WD 6:  Seg 21   228-271      4.63  305.90  0.00469       20.0%     47.41
  WD 7:  Seg 25   275-315      5.90  358.57  0.00092       12.5%     54.52
  WD 8:  Seg 29   327-366      5.64  347.83  0.00128        7.5%     57.06
  WD 9:  Seg 33   378-416      8.07  447.97  5.7e-05       25.0%     53.86
  WD10:  Seg 37   417-467      6.76  393.87  0.00031       32.5%     56.05
  WD11:  Seg 42   482-519      8.56  468.35  3.0e-05       27.5%     48.38
  WD12:  Seg 45   523-561      9.62  512.20  7.8e-06       40.0%     56.65
  WD13:  Seg 49   565-603      9.72  516.17  6.9e-06       42.5%     53.77
  WD14:  Seg 53   607-645      9.68  514.59  7.2e-06       40.0%     58.16
  WD15:  Seg 57   659-696      3.77  270.31  0.01409        7.5%     39.51
  WD16:  Seg 61   697-747      4.49  300.02  0.00562       17.5%     43.10

Multiple sequence alignment of 16 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    6-44     SYK------GI----SLNPIY--AGSSAVATV------SE-----NG---K----ILATPVLD--------EINIID
   WD 2   45-89     LTP-GSRKILH----KISNED--EQEITALKL------TP-----DG---Q----YLTYVSQA-------QLLKIFH
   WD 3   93-130    -GK------VV----RSMKIS---SPSYILDA------DS-----TS---T----LLAVGGTD-------GSIIVVD
   WD 4  134-176    -GY------IT----HSFKGH--GGTISSLKF------YG-----QL---NSKIWLLASGDTN-------GMVKVWD
   WD 5  180-224    -RK------CL----HTLQEH--TSAVRGLDIIEVPDNDE-----PS---L----NLLSGGRD-------DIINLWD
   WD 6  228-271    -KK------KC----KLLKTLPVNQQVESCGF------LK-----DGDGKR----IIYTAGGD-------AIFQLID
   WD 7  275-315    -GS------VL----KRTNKP--IEELFIIGV------LP---ILSN---S----QMFLVLSD-------QTLQLIN
   WD 8  327-366    -IQ------VT----SSIAGN--HGIIADMRY-----VGP-----EL---N----KLALATNS-------PSLRIIP
   WD 9  378-416    -PL------DV----EIYEGH--EDLLNSLDA------TE-----DG---L----WIATASKD-------NTAIVWR
   WD10  417-467    YNENSCKFDIY----AKYIGH--SAAVTAVGL------PNIVSKGYP---E----FLLTASND-------LTIKKWI
   WD11  482-519    VSE------------YTRHAH--EKDINALSV------SP-----ND---S----IFATASYD-------KTCKIWN
   WD12  523-561    -GE------LE----ATLANH--KRGLWDVSF------CQ-----YD---K----LLATSSGD-------KTVKIWS
   WD13  565-603    -FS------VM----KTLEGH--TNAVQRCSF------IN-----KQ---K----QLISCGAD-------GLIKIWD
   WD14  607-645    -GE------CL----KTLDGH--NNRLWALST------MN-----DG---D----MIVSADAD-------GVFQFWK
   WD15  659-696    AK--------L----QVEQEQ--SLQNYMSKG------DW-----TN---A----FLLAMTLD-------HPMRLFN
   WD16  697-747    VLK------RALGESRSRQDT--EEGKIEVIF------NE-----EL---D----QAISILNDEQLILLMKRCRDWN

   WD40 Template    TGE------CL----RTLSGH--TSGVTSVSF------SP-----DG---K----RLVSGSED-------GTIKVWD