Input parameters:

  Query = YLR429W (Len=651)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YLR429W, Len=651):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSGKFVRASKYRHVFGQAAKKELQYEKLKVTNNAWDSNLLKTNGKFIAVNWNASGGGAFAVIPIEEVGKAPDQVPLFRGH 80  
WD40-rpts                           (____________________WD 1___________________)(_____________

Query       81 TAQVLDTDFDPFNDHRIASGSDDSKIGIWDIPENYKFHDHVDEDGEPIDIKPVKFLTGHARKVGHVLYHPVAENVLASSS 160 
WD40-rpts      ______WD 2___________________)                   (_________________WD 3_________

Query      161 GDYTVKLWNVETGKDMITLKHPDMVTSMSFSYDGNYLATVARDKKLRVWNIREEKIVSEGPAHTGAKNQRVVWLGNSDRL 240 
WD40-rpts      ________)(__________________WD 4_________________)   (___________________WD 5___

Query      241 ATTGFSKLSDRQIGIWDAFNIEKGDLGGFYTVDQSSGILMPFYDEGNKILYLVGKGDGNIRYYEFQNDELFELSEFQSTE 320 
WD40-rpts      ________________)      (__________________WD 6_________________)  (_____________

Query      321 AQRGFAVAPKRMVNVKENEVLKGFKTVVDQRIEPVSFFVPRRSEEFQEDIYPDAPSNKPALTAEEWFSGKSVEGPILVSM 400 
WD40-rpts      ____WD 7________________)                                                       

Query      401 RSIYDGSAPSFHEAKRPQQPTTQETALEEKKEQPKVEKPISESEKEVKQEAPKSPSPLKSASSSSTINHVLKEDNSINKL 480 
WD40-rpts                                                                                      

Query      481 LKKSSDIDQVNNAEDPSRDTSGWEEADDEPAPIKIETPVTPTETKKDRTPKVEPSKELKPEPVSIATDRKQEQSLPQEEK 560 
WD40-rpts                                                                                      

Query      561 SSEKTKSPEQEKSATPPSSITAAKTAITASSKEEPSAARTSPKSLGLKKSVEKLSTLVLQLEDVVDKLTKANLDKDERLL 640 
WD40-rpts                                                                                      

Query      641 KLEQKIGELSK 651 
WD40-rpts                 

7 WD40-repeats found in QUERY=YLR429W (Len=651):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    22-66       3.03  240.00  0.03570       15.0%     18.30
  WD 2:  Seg  7    67-110      8.40  461.47  3.8e-05       37.5%     46.37
  WD 3:  Seg 10   130-169      6.30  374.74  0.00055       32.5%     50.62
  WD 4:  Seg 14   170-210      7.89  440.73  7.1e-05       32.5%     51.10
  WD 5:  Seg 18   214-257      4.19  287.78  0.00821       25.0%     43.84
  WD 6:  Seg 22   264-304      4.79  312.53  0.00382       20.0%     44.83
  WD 7:  Seg 26   307-345      5.09  324.88  0.00260       25.0%     44.07

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   22-66     -ELQ---YEKLK-VTNNAW-DSNLLKT-NGKF--IAVNWNASGGGAFAVIPIEE
   WD 2   67-110    VGKAPDQVPLFR-GHTAQV-LDTDFDPFNDHR--IA------SGSDDSKIGIWD
   WD 3  130-169    -IKP---VKFLT-GHARKV-GHVLYHP-VAEN-VLA------SSSGDYTVKLWN
   WD 4  170-210    VETG---KDMITLKHPDMV-TSMSFSY-DGNY--LA------TVARDKKLRVWN
   WD 5  214-257    -EKI---VSEGP-AHTGAKNQRVVWLG-NSDR--LA--TTGFSKLSDRQIGIWD
   WD 6  264-304    -GDL---GGFYT-VDQSSG-ILMPFYD-EGNKILYL------VGKGDGNIRYYE
   WD 7  307-345    -NDE---LFELS-EFQSTE-AQRGFAV-APKR--MV------NVKENEVLKGFK

   WD40 Template    TGEC---LRTLS-GHTSGV-TSVSFSP-DGKR--LV------SGSEDGTIKVWD