Input parameters:

  Query = YMR049C (Len=807)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YMR049C, Len=807):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MMAKNNKTTEAKMSKKRAASEESDVEEDEDKLLSVDGLIDAEASESDEDDDEYESAVEEKESSSDKEAQDDSDDDSDAEL 80  
WD40-rpts                                                                                      

Query       81 NKLLAEEEGDGEEDYDSSEFSDDTTSLTDRLSGVKLQTIVDPNIYSKYADGSDRIIKPEINPVYDSDDSDAETQNTIGNI 160 
WD40-rpts                                                                                      

Query      161 PLSAYDEMPHIGYDINGKRIMRPAKGSALDQLLDSIELPEGWTGLLDKNSGSSLNLTKEELELISKIQRNEQTDDSINPY 240 
WD40-rpts                                                                                      

Query      241 EPLIDWFTRHEEVMPLTAVPEPKRRFVPSKNEAKRVMKIVRAIREGRIIPPKKLKEMKEKEKIENYQYDLWGDSTETNDH 320 
WD40-rpts                                                                                      

Query      321 VMHLRAPKLPPPTNEESYNPPEEYLLSPEEKEAWENTEYSERERNFIPQKYSALRKVPGYGESIRERFERSLDLYLAPRV 400 
WD40-rpts                                                                                      

Query      401 RKNKLNIDPNSLIPELPSPKDLRPFPIRCSTIYAGHKGKVRTLSIDPSGLWLATGSDDGTVRVWEILTGREVYRTTLIDD 480 
WD40-rpts                                       (_____________WD 1_____________)           (___

Query      481 EENPDYHIECIEWNPDANNGILAVAVGENIHLIVPPIFGYDIENNGKTKIEDGFGYDTFGTVKKSNLEVNENGDGDEDGE 560 
WD40-rpts      _____________WD 2________________)                                              

Query      561 NESAKNAVKKQVAQWNKPSQKQLEKDICITISCKKTVKKLSWHRKGDYFVTVQPDSGNTSVLIHQVSKHLTQSPFKKSKG 640 
WD40-rpts                    (_______________________WD 3______________________)     (_________

Query      641 IIMDAKFHPFKPQLFVCSQRYVRIYDLSQQILVKKLLPGARWLSKIDIHPRGDNLIASSFDKRVLWHDLDLASTPYKTLR 720 
WD40-rpts      ______WD 4_______________)   (_________________WD 5________________)    (_______

Query      721 YHEKAVRSVNFHKKLPLFSSAADDGTIHVFHATVYDDMMKNPMIVPLKKLTGHKVINSLGVLDAIWHPREAWLFSAGADN 800 
WD40-rpts      __________WD 6________________)            (___________________WD 7_____________

Query      801 TARLWTT 807 
WD40-rpts      _____) 

7 WD40-repeats found in QUERY=YMR049C (Len=807):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5   434-465      7.94  442.59  6.7e-05       35.0%     46.52
  WD 2:  Seg  9   477-514      2.79  229.91  0.04851        7.5%     37.32
  WD 3:  Seg 15   575-625      3.31  251.28  0.02529       12.5%     51.72
  WD 4:  Seg 19   631-666      3.55  261.45  0.01850       15.0%     46.76
  WD 5:  Seg 22   670-708      6.34  376.37  0.00053       17.5%     56.57
  WD 6:  Seg 26   713-751      7.17  410.95  0.00018       32.5%     47.12
  WD 7:  Seg 28   764-806      4.91  317.42  0.00328       30.0%     47.08

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  434-465    ----------------AGH----KGKVRTLSIDPSGLW-LATGSDDG---TVRVWE
   WD 2  477-514    -----------LIDDEENP----DYHIECIEWNPDANNGILAVAVGE---NIHLIV
   WD 3  575-625    WNKPSQKQLEKDICITISC----KKTVKKLSWHRKGDY-FVTVQPDSGNTSVLIHQ
   WD 4  631-666    T-----------QSPFKKS----KGIIMDAKFHPFKPQ-LFVCS-QR---YVRIYD
   WD 5  670-708    -Q--------ILVKKLLPG----ARWLSKIDIHPRGDN-LIASSFDK---RVLWHD
   WD 6  713-751    -S--------TPYKTLRYH----EKAVRSVNFHKKLPL-FSSAADDG---TIHVFH
   WD 7  764-806    -I--------VPLKKLTGHKVINSLGVLDAIWHPREAW-LFSAGADN---TARLWT

   WD40 Template    TG--------ECLRTLSGH----TSGVTSVSFSPDGKR-LVSGSEDG---TIKVWD