Input parameters:

  Query = YMR093W (Len=513)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YMR093W, Len=513):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSTARPRIITSKAPLLPQQTTPEQRYWRQYTSAQLVKEHNSVTHISFNPQHPHDFAVTSSTRVQIFSSRTRQVIKTFSRF 80  
WD40-rpts                                          (_____________WD 1____________)   (_________

Query       81 KDVVYSASFRSDGKLLCAGDATGLVSVYDSYNPRTILLSINASTHPTHVTKFHTQDNKILATASDDRVTRLWDISNAYEP 160 
WD40-rpts      ________WD 2________________)                                       (___________

Query      161 QLELTGATDYVRTLSFIPAAPHLVATGSYDGLIRLYDTRSSGSTPIYSLNHDQPVENVIAVSPTQIVSCGGNNFKVWDLT 240 
WD40-rpts      ___________WD 3_____________________)    (________________WD 4_______________)  

Query      241 SNKKLYERGNFNKAVTCLDYVENFDSPMQSALIASSLDGHVKVFDPLDNFQVKFGWKFSGPVLSCAVSPSTAQGNRHLVA 320 
WD40-rpts       (___________________WD 5___________________)   (___________________WD 6________

Query      321 GLSSGLLAIRTKKKEKRSSDKENAPASFNKNAKSNNFQRMMRGSEYQGDQEHIIHNDKVRSQRRMRAFERNINQFKWSEA 400 
WD40-rpts      __________)   (_________________WD 7________________)                           

Query      401 LDNAFVPGMAKELTLTVLQELRKRGKVRVALYGRDESTLEPLLNWCLKGIEDVRSASIVADWVAVVLELYGNTLESSPVL 480 
WD40-rpts                                                                                      

Query      481 QELMIDLKTKVRHEIHKSKEAQRIEGMLQLLTS 513 
WD40-rpts                                       

7 WD40-repeats found in QUERY=YMR093W (Len=513):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    37-67       4.90  316.98  0.00333       12.5%     46.28
  WD 2:  Seg  5    71-109      8.65  472.15  2.7e-05       35.0%     55.64
  WD 3:  Seg 12   149-197      7.30  416.13  0.00015       40.0%     40.74
  WD 4:  Seg 16   202-238      5.26  332.08  0.00208       22.5%     42.28
  WD 5:  Seg 19   242-285      7.61  429.07  0.00010       30.0%     56.14
  WD 6:  Seg 23   289-331      6.08  365.78  0.00073       20.0%     55.87
  WD 7:  Seg 27   335-373      5.68  349.48  0.00121       12.5%     33.59

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   37-67     -----------------KEHNSVTHISF-----NPQ----HPHD-FAVTSSTRVQIFS
   WD 2   71-109    -R--------QVIKTFSRFKDVVYSASF-----RSD----GKLL-CAGDATGLVSVYD
   WD 3  149-197    TRLWDISNAYEPQLELTGATDYVRTLSF-----IPA----APHLVATGSYDGLIRLYD
   WD 4  202-238    -G--------STPIYSLNHDQPVENVIA-----VSP----TQIV-SCG--GNNFKVWD
   WD 5  242-285    -N--------KKLYERGNFNKAVTCLDYVENFDSPM----QSAL-IASSLDGHVKVFD
   WD 6  289-331    -N--------FQVKFGWKFSGPVLSCAV-----SPSTAQGNRHL-VAGLSSGLLAIRT
   WD 7  335-373    -E--------KRSSDKENAPASFNKNAK-----SNN----FQRM-MRGSEYQGDQEHI

   WD40 Template    TG--------ECLRTLSGHTSGVTSVSF-----SPD----GKRL-VSGSEDGTIKVWD