Input parameters:

  Query = YMR116C (Len=319)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YMR116C, Len=319):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MASNEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYA 80  
WD40-rpts           (__________________WD 1_________________)        (_________________WD 2____

Query       81 LSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNE 160 
WD40-rpts      ____________)   (_________________WD 3________________)  (____________________WD

Query      161 KADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEV 240 
WD40-rpts       4___________________)   (_________________WD 5________________)   (____________

Query      241 FSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTAN 319 
WD40-rpts      ____WD 6_______________)           (_________________WD 7________________)     

7 WD40-repeats found in QUERY=YMR116C (Len=319):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     6-46       8.39  461.37  3.8e-05       35.0%     52.50
  WD 2:  Seg  5    55-93       9.60  511.40  8.0e-06       32.5%     55.33
  WD 3:  Seg  9    97-135     10.34  541.71  3.1e-06       42.5%     55.12
  WD 4:  Seg 13   138-182      9.01  487.00  1.7e-05       37.5%     58.04
  WD 5:  Seg 17   186-224      9.89  523.14  5.5e-06       30.0%     54.81
  WD 6:  Seg 21   228-264      6.22  371.79  0.00061       30.0%     53.61
  WD 7:  Seg 25   276-314      7.64  430.06  9.9e-05       27.5%     47.23

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    6-46     VLVLRGTLEGHNGWVTSLATSA-----GQPNLLLSASRDKTLISWK
   WD 2   55-93     -GVPVRSFKGHSHIVQDCTLTA------DGAYALSASWDKTLRLWD
   WD 3   97-135    -GETYQRFVGHKSDVMSVDIDK------KASMIISGSRDKTIKVWT
   WD 4  138-182    -GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWN
   WD 5  186-224    -FQIEADFIGHNSNINTLTASP------DGTLIASAGKDGEIMLWN
   WD 6  228-264    -KKAMYTLSAQ-DEVFSLAFSP------NRYWLAAAT-ATGIKVFS
   WD 7  276-314    -PEFAGYSKAAEPHAVSLAWSA------DGQTLFAGYTDNVIRVWQ

   WD40 Template    TGECLRTLSGHTSGVTSVSFSP------DGKRLVSGSEDGTIKVWD