Input parameters:

  Query = YMR131C (Len=511)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YMR131C, Len=511):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSKRSIEVNEEQDRVVSAKTESHSVPAIPASEEQDAPKNDLEEQLSDEFDSDGEIIEIDGDDEINDEDDLRKKQEEAETL 80  
WD40-rpts                                                                                      

Query       81 VQKDQSEGNKEKIQELYLPHMSRPLGPDEVLEADPTVYEMLHNVNMPWPCLTLDVIPDTLGSERRNYPQSILLTTATQSS 160 
WD40-rpts                                                                                      

Query      161 RKKENELMVLALSNLAKTLLKDDNEGEDDEEDDEDDVDPVIENENIPLRDTTNRLKVSPFAISNQEVLTATMSENGDVYI 240 
WD40-rpts                                                     (_______________WD 1_____________

Query      241 YNLAPQSKAFSTPGYQIPKSAKRPIHTVKNHGNVEGYGLDWSPLIKTGALLSGDCSGQIYFTQRHTSRWVTDKQPFTVSN 320 
WD40-rpts      _)                   (__________________WD 2__________________)        (________

Query      321 NKSIEDIQWSRTESTVFATAGCDGYIRIWDTRSKKHKPAISVKASNTDVNVISWSDKIGYLLASGDDNGTWGVWDLRQFT 400 
WD40-rpts      _________WD 3________________)     (_________________WD 4_________________)     

Query      401 PSNADAVQPVAQYDFHKGAITSIAFNPLDESIVAVGSEDNTVTLWDLSVEADDEEIKQQAAETKELQEIPPQLLFVHWQK 480 
WD40-rpts            (_________________WD 5_________________)                                  

Query      481 EVKDVKWHKQIPGCLVSTGTDGLNVWKTISV 511 
WD40-rpts                                     

5 WD40-repeats found in QUERY=YMR131C (Len=511):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  7   208-242      3.29  250.63  0.02580       15.0%     38.62
  WD 2:  Seg 10   262-303      3.09  242.26  0.03332       25.0%     51.80
  WD 3:  Seg 15   312-350      6.01  363.12  0.00079       15.0%     48.41
  WD 4:  Seg 18   356-395      6.26  373.42  0.00058       30.0%     51.83
  WD 5:  Seg 22   407-446      7.19  411.59  0.00018       32.5%     53.90

Multiple sequence alignment of 5 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  208-242    LRDTTNRLK------VSPFAISN-Q-EV--LTATMSENGDVYIYN
   WD 2  262-303    -KRPIHTVKNHGNVEGYGLDWSP-L-IKTGALLSGDCSGQIYFTQ
   WD 3  312-350    DKQPF--TVSNNKS-IEDIQWSRTE-ST--VFATAGCDGYIRIWD
   WD 4  356-395    -HKPAISVKASNTD-VNVISWSD-KIGY--LLASGDDNGTWGVWD
   WD 5  407-446    -VQPVAQYDFHKGA-ITSIAFNPLD-ES--IVAVGSEDNTVTLWD

   WD40 Template    TGECLRTLSGHTSG-VTSVSFSP-D-GK--RLVSGSEDGTIKVWD