Input parameters:

  Query = YMR146C (Len=347)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YMR146C, Len=347):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWD 80  
WD40-rpts      (________________WD 1________________)   (_________________WD 2________________)

Query       81 VSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAG 160 
WD40-rpts         (___________________WD 3__________________)           (___________________WD 

Query      161 WSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPL 240 
WD40-rpts      4___________________)(___________________WD 5__________________)   (____________

Query      241 NTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLH 320 
WD40-rpts      ____WD 6________________)                 (_________________WD 7________________

Query      321 HFEKSYFDFKYDVEKAAEAKEHMQEAN 347 
WD40-rpts      )                          

7 WD40-repeats found in QUERY=YMR146C (Len=347):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-38       8.84  479.86  2.1e-05       30.0%     53.09
  WD 2:  Seg  5    42-80      10.31  540.68  3.2e-06       45.0%     56.70
  WD 3:  Seg  9    84-126      6.28  374.28  0.00056       27.5%     53.87
  WD 4:  Seg 14   138-181      6.91  400.06  0.00025       22.5%     57.05
  WD 5:  Seg 18   182-224      8.74  475.88  2.4e-05       22.5%     56.19
  WD 6:  Seg 22   228-265      5.21  330.05  0.00222       10.0%     48.76
  WD 7:  Seg 27   283-321      9.50  507.27  9.0e-06       32.5%     55.25

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-38     -----M----KAIKLTGHERPLTQVKYNKEGDLLFSC-----SKDSSASVWY
   WD 2   42-80     -G---E----RLGTLDGHTGTIWSIDVDCFTKYCVTG-----SADYSIKLWD
   WD 3   84-126    -G---Q----CVATWKSPVP-VKRVEFSPCGNYFLAILDNVMKNPGSINIYE
   WD 4  138-181    KV---SEEPIHKIITHEGLDAATVAGWSTKGKYIIAG-----HKDGKISKYD
   WD 5  182-224    VSNNYE----YVDSIDLHEKSISDMQFSPDLTYFITS-----SRDTNSFLVD
   WD 6  228-265    -L---Q----VLKKYETDCP-LNTAVITPLKEFIILG-----GGQEAKDVTT
   WD 7  283-321    -E---E----EIGRVQGHFGPLNTVAISPQGTSYASG-----GEDGFIRLHH

   WD40 Template    TG---E----CLRTLSGHTSGVTSVSFSPDGKRLVSG-----SEDGTIKVWD