Input parameters:

  Query = YNL317W (Len=465)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YNL317W, Len=465):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDGHNQNQYQNQNQIQQSQQPPLKKYVTQRRSVDVSSPYINLYYNRRHGLPNLVVEPETSYTIDIMPPNAYRGRDRVINL 80  
WD40-rpts      (______________WD 1_____________)   (___________________WD 2__________________) 

Query       81 PSKFTHLSSNKVKHVIPAIQWTPEGRRLVVATYSGEFSLWNASSFTFETLMQAHDSAVTTMKYSHDSDWMISGDADGMIK 160 
WD40-rpts        (_________________WD 3________________)   (_________________WD 4______________

Query      161 IWQPNFSMVKEIDAAHTESIRDMAFSSNDSKFVTCSDDNILKIWNFSNGKQERVLSGHHWDVKSCDWHPEMGLIASASKD 240 
WD40-rpts      __)   (_________________WD 5________________)   (_________________WD 6__________

Query      241 NLVKLWDPRSGNCISSILKFKHTVLKTRFQPTKGNLLMAISKDKSCRVFDIRYSMKELMCVRDETDYMTLEWHPINESMF 320 
WD40-rpts      ______)   (_________________WD 7_________________)   (_________________WD 8_____

Query      321 TLACYDGSLKHFDLLQNLNEPILTIPYAHDKCITSLSYNPVGHIFATAAKDRTIRFWTRARPIDPNAYDDPTYNNKKING 400 
WD40-rpts      ____________)      (_________________WD 9________________)                      

Query      401 WFFGINNDINAVREKSEFGAAPPPPATLEPHALPNMNGFINKKPRQEIPGIDSNIKSSTLPGLSI 465 
WD40-rpts                                                                       

9 WD40-repeats found in QUERY=YNL317W (Len=465):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-33       5.92  359.17  0.00090        7.5%     13.28
  WD 2:  Seg  3    37-79       6.21  371.14  0.00062       10.0%     29.13
  WD 3:  Seg  7    83-121      8.62  470.62  2.8e-05       17.5%     54.26
  WD 4:  Seg 11   125-163      9.64  512.93  7.6e-06       32.5%     53.87
  WD 5:  Seg 15   167-205      9.41  503.21  1.0e-05       22.5%     52.75
  WD 6:  Seg 19   209-247      9.86  522.03  5.7e-06       37.5%     56.29
  WD 7:  Seg 23   251-290      8.16  451.57  5.1e-05       27.5%     54.47
  WD 8:  Seg 27   294-333      6.74  393.06  0.00031       12.5%     57.14
  WD 9:  Seg 31   340-378      8.82  479.01  2.2e-05       27.5%     44.50

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-33     ------MDGHNQNQYQNQNQI-QQS-Q----QPPLKKYVTQRRSV
   WD 2   37-79     SPYINLYYNRRHGLPNLVVEP-ETS-YTIDIMPPNAYRGRDRVIN
   WD 3   83-121    KFTHLSSNKVKHVIPAIQWTP-EGR-R----LVVATYSGEFSLWN
   WD 4  125-163    FTFETLMQAHDSAVTTMKYSH-DSD-W----MISGDADGMIKIWQ
   WD 5  167-205    SMVKEIDAAHTESIRDMAFSS-NDS-K----FVTCSDDNILKIWN
   WD 6  209-247    GKQERVLSGHHWDVKSCDWHP-EMG-L----IASASKDNLVKLWD
   WD 7  251-290    GNCISSILKFKHTVLKTRFQPTKGN-L----LMAISKDKSCRVFD
   WD 8  294-333    SMKELMCVRDETDYMTLEWHP-INESM----FTLACYDGSLKHFD
   WD 9  340-378    EPILTIPYAHDKCITSLSYNP-VGH-I----FATAAKDRTIRFWT

   WD40 Template    GECLRTLSGHTSGVTSVSFSP-DGK-R----LVSGSEDGTIKVWD