Input parameters:

  Query = YOL087C (Len=1116)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YOL087C, Len=1116):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNQLTVSYGLISPDYCTSQDAHILPITKILYPDIPGKNYFLTSGRDGSIILHKNTQLSNEPETAATTIKNDAIRMQVHSD 80  
WD40-rpts                  (__________________WD 1_________________)               (___________

Query       81 WASDLIHVNMKNSDPSAGDTFISVSHDFSIVLISVNAQLTTWDKKIIGDHDDYIKCIVPIHYEMSNDYELEEQEGGPDNV 160 
WD40-rpts      _________WD 2____________________)                                            (_

Query      161 HDGINNGIVVDEQNNFLFVTGGLDRKIKLWCLSSGPEKMATLLHTFDNAQSNDTGSIYSMSPIIPKYSFDDNQTSRPFDF 240 
WD40-rpts      _____________WD 3_____________)                       (_________________WD 4____

Query      241 VAGDCNGDLIFYSCKYRKEVIRIQNAHRTNIKVVRTLDDSTRLISTSSDGVINVWDLNCRHDQTTGALQLPKKIGSWSWD 320 
WD40-rpts      ____________)    (_________________WD 5________________)   (_________________WD 

Query      321 SSIWCVQGTSLDKLYFGDSQGNVMRANLSSYEDAKLTRIFKPDHHHHHHHHHEHEEQNISTTDAKVKKYGGILDIALLPN 400 
WD40-rpts      6________________)   (_________________WD 7________________)(________________WD 

Query      401 EKLLFSFCTDSNLNVLDLTNNHFSVNEGGFALTRSSLLTNRRHVITENTKGQMQRWDIVSCELLNTFDSSEGSFDDIVMK 480 
WD40-rpts      8_______________)  (________________WD 9________________)                       

Query      481 YTSKEILSHWCTVSVKVGMLFVKINPKFLKTEVYGSALKDYQVVNNIEINSDERYNLGKIVINSLFNEFISYEVQKDKLL 560 
WD40-rpts                                                                                      

Query      561 RKKIFSLKKKDLTNSLTLDTGYNSESKKNNKDKKRKSTFKISSTLSIGNTNSSGTPPNSAPATPVMAETIVLEEQPLLQS 640 
WD40-rpts                                                                                      

Query      641 ASDKAIDDSLELVQPLPASKKPYFRTQSSGSLLSRKFKSFRSTSGRATTGLNTPEEPKGILPDTPHVINDDSAFPQAINT 720 
WD40-rpts                                                                                      

Query      721 TQQSKDATPESMLWNHPFKLEQKLSAISSQDLPSNNTHNKLRSSENSRANSTSTLEGNEKKKPEFMPDLLEQIQESYKQQ 800 
WD40-rpts                                                                                      

Query      801 YMNTSSLKYLTKRLPVTKIIKASSCPIIRVKSATLVLVHLWKEGSCGGRVLFSTLLPPSHVDNETVSGGKENSKPPDDEE 880 
WD40-rpts                                                                                      

Query      881 VDLQAVDDDKLGKYDLIDGELGSRLNRRQIFEQLEENLPYWFAKALFRDIKTVEEQPKLNFLIMPWSSVGGSEAAGNENK 960 
WD40-rpts                                                                                      

Query      961 KKFISASDTTESSGNDSSDSSLGNGNEAVSPSTQQQFHNMLKFGRPKTSEQELNPTDLPRISEANVKLVAPGMIRVKKIK 1040
WD40-rpts                                                                                      

Query     1041 LYVADRFETKTPEMKAKMEPSLWLDLLCRGQVLDNDMTLNTVRTLYWKSQGDIVLEYRRKVHNSPLVHEVNGNEGK 1116
WD40-rpts                                                                                  

9 WD40-repeats found in QUERY=YOL087C (Len=1116):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    13-53       6.16  369.00  0.00066       15.0%     41.68
  WD 2:  Seg  5    69-114      4.84  314.44  0.00360       17.5%     31.32
  WD 3:  Seg  9   159-191      5.23  330.79  0.00217       17.5%     43.66
  WD 4:  Seg 13   215-253      3.43  256.53  0.02153       10.0%     33.84
  WD 5:  Seg 16   258-296      8.33  458.82  4.1e-05       37.5%     51.17
  WD 6:  Seg 19   300-338      4.22  288.80  0.00796       10.0%     34.80
  WD 7:  Seg 23   342-380      3.83  272.97  0.01298       12.5%     52.58
  WD 8:  Seg 27   381-417      4.82  313.63  0.00369       25.0%     49.00
  WD 9:  Seg 31   420-457      3.86  274.27  0.01247       12.5%     47.90

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   13-53     -PDYCTSQDAHILPITKI-------LYPDIPGKNYFLTSGRDGSIILHK
   WD 2   69-114    -KNDAIRMQVHSDWASDLIHVNMKNSDP--SAGDTFISVSHDFSIVLIS
   WD 3  159-191    -------NVHDGINNGIV-------VDE--QNNFLFVTGGLDRKIKLWC
   WD 4  215-253    -GSIYSMSPIIPKYSFDD-------NQT--SRPFDFVAGDCNGDLIFYS
   WD 5  258-296    -KEVIRIQNAHRTNIKVV-------RTL--DDSTRLISTSSDGVINVWD
   WD 6  300-338    -RHDQTTGALQLPKKIGS-------WSW--DSSIWCVQGTSLDKLYFGD
   WD 7  342-380    -NVMRANLSSYEDAKLTR-------IFK--PDHHHHHHHHHEHEEQNIS
   WD 8  381-417    TTDAKVKKYG---GILDI-------ALL--PNEKLLFSFCTDSNLNVLD
   WD 9  420-457    -NNHFSVNEGGFALTRSS-------LLT---NRRHVITENTKGQMQRWD

   WD40 Template    TGECLRTLSGHTSGVTSV-------SFS--PDGKRLVSGSEDGTIKVWD