Input parameters:

  Query = YOR026W (Len=341)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YOR026W, Len=341):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MQIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGE 80  
WD40-rpts      (_________________WD 1________________)      (_________________WD 2_____________

Query       81 ILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNS 160 
WD40-rpts      ____)   (_________________WD 3_________________)             (_______________WD 

Query      161 SRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRC 240 
WD40-rpts      4______________)(____________________WD 5____________________)                  

Query      241 HRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTFKTNA 320 
WD40-rpts         (_______________WD 6_______________)(___________________WD 7_________________

Query      321 AIDQTIELNASSIYIIFDYEN 341 
WD40-rpts      _)                   

7 WD40-repeats found in QUERY=YOR026W (Len=341):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-39       7.59  428.38  0.00010       15.0%     51.41
  WD 2:  Seg  5    46-85       5.31  334.16  0.00195       15.0%     54.53
  WD 3:  Seg  9    89-128      7.42  421.05  0.00013       22.5%     53.24
  WD 4:  Seg 14   142-176      4.05  281.83  0.00987       15.0%     37.12
  WD 5:  Seg 18   177-222      4.03  281.10  0.01010       22.5%     53.67
  WD 6:  Seg 23   244-279      7.07  406.55  0.00021       27.5%     37.01
  WD 7:  Seg 26   280-322      3.42  255.75  0.02205        7.5%     32.95

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-39     -M---QI-----VQIEQAPKDYISDIKI--I-P-SKS-LLLITSWDGSLTVYK
   WD 2   46-85     -N---VD-----LLQSLRYKHPLLCCNF--IDN-TDL-QIYVGTVQGEILKVD
   WD 3   89-128    -S---PS-----FQALTNNEANLGICRI--C-K-YGDDKLIAASWDGLIEVID
   WD 4  142-176    ---------------LNSNNTKVKNKIFTMD-T-NSS-RLIVGMNNSQVQWFR
   WD 5  177-222    LP---LCEDDNGTIEESGLKYQIRDVAL--L-PKEQE-GYACSSIDGRVAVEF
   WD 6  244-279    ------------NLKDTNLAYPVNSIEF--S-P-RHK-FLYTAGSDGIISCWN
   WD 7  280-322    LQTRKKI-----KNFAKFNEDSVVKIAC--S-D-NIL-CLATSDDTFKTNAAI

   WD40 Template    TG---EC-----LRTLSGHTSGVTSVSF--S-P-DGK-RLVSGSEDGTIKVWD