Input parameters:

  Query = YOR038C (Len=875)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YOR038C, Len=875):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MRLLKYPLDIHNEQVNALAALGPYIILAGSGGHVMAWRQQQLVDTAFDRVMIKDLKPEVSFQVDQDTTGDIFFITGDLET 80  
WD40-rpts      (________________WD 1________________)                (_________________WD 2____

Query       81 LYIGSEHRLWGYSGWLCRDTNNINSVEKMNSKLLFECKSPSTITDVKYDINLGILFVLLSNENKILLFRHKTFDKLSEIT 160 
WD40-rpts      _____________)               (_________________WD 3_________________)(__________

Query      161 IDKASKPITGIIDPTGQTFTVMTSDRSILVYQINKTGTHKLINKLTQHVQMYPLHYRISMSPQADILPVINSVKGVPNNA 240 
WD40-rpts      _________WD 4__________________)           (________________WD 5_______________)

Query      241 TSCTALLDRNNNYKVTKTLVTPSSNGCRVLVYSPAFYEKPNLKKGTSTRYNLIATSGSTDGTILVWNTKRMKPLFNALQV 320 
WD40-rpts              (___________________________WD 6__________________________)(____________

Query      321 SSTAINDMSWSQDGFTLFAISNDATLYTFAFQEKDLGVALPQTEIKSLQEVNKKLPKLEEPLAEQIPKSFPENIKLEESA 400 
WD40-rpts      _______WD 7__________________)                                                  

Query      401 SAAPIPNDIGRSAVGKKPTKKKTANNQTNGIKTIQSTSMEFNTPSYTVPRDLKRKPKEATPSNIAPGSKKQKKELQPIDF 480 
WD40-rpts                                                                                      

Query      481 LDTGLLLPNTSFSRIRLATPKIRSTFKYSPINNPNLILDVKNGSGNEQRPTIVKLTSKVLDQDQVLFQDFIPKLITICTA 560 
WD40-rpts                                  (_________________WD 8_________________)            

Query      561 GDTFWSFCSEDGSIYIYSDSGRKLMAPLVLGVSISFLEACGTYLLCLTSIGELYCWNIEQKKLAFPTNTIYPLLNPSLRY 640 
WD40-rpts                        (_________________WD 9________________)                       

Query      641 SDDILTRAENITLCSITKKGVPLVTLSNGDGYLFDKNMETWLLVSDGWWAYGSQYWDTTNTTGLSSSKANTDSFNGSESN 720 
WD40-rpts                                                                                      

Query      721 INEIVSDIKNDNQSIINFLECKTNDELNRKGRIKNLQRFARTILMKEGFENMEEIVTLSHLENKILISIRLEEPEEFSKL 800 
WD40-rpts                                                                                      

Query      801 MMVYCIRLSELGYMDRLNDVFQWLYDDLPISGTGSAFADKDFKRNLLKKILIACGDIRQVQRVTTRYAKEMNIIS 875 
WD40-rpts                                                                                 

9 WD40-repeats found in QUERY=YOR038C (Len=875):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-38       6.48  382.34  0.00044       15.0%     45.98
  WD 2:  Seg  6    55-94       5.31  334.15  0.00195       15.0%     43.84
  WD 3:  Seg 10   110-149      4.58  303.78  0.00500       20.0%     54.60
  WD 4:  Seg 14   150-192      5.18  328.75  0.00231       17.5%     50.16
  WD 5:  Seg 19   204-240      4.35  294.23  0.00673       12.5%     19.22
  WD 6:  Seg 22   249-307      5.42  338.39  0.00171       30.0%     47.91
  WD 7:  Seg 26   308-350      7.02  404.70  0.00022       25.0%     56.74
  WD 8:  Seg 31   509-548      4.24  289.76  0.00773       12.5%      8.76
  WD 9:  Seg 37   579-617      4.83  314.29  0.00361       15.0%     41.73

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-38     MRL----LKY----PLDIHNEQVNAL---AA---------------L-GPYIILAGSGGHVMAWR
   WD 2   55-94     -LK----PEV----SFQVDQDTTGDIFFITG---------------D-LETLYIGSEHRLWGYSG
   WD 3  110-149    -NS----KLL----FECKSPSTITDVKY-DI---------------NLGILFVLLSNENKILLFR
   WD 4  150-192    HKT----FDKLSEITIDKASKPITGI-I-DP---------------T-GQTFTVMTSDRSILVYQ
   WD 5  204-240    -------KLT----QHVQMYPLHYRISM-SP---------------Q-ADILPVINSVKGVPNNA
   WD 6  249-307    RNNNYKVTKT----LVTPSSNGCRVLVY-SPAFYEKPNLKKGTSTRY-NLIATSGSTDGTILVWN
   WD 7  308-350    TKR-MKPLFN----ALQVSSTAINDMSW-SQ---------------D-GFTLFAISNDATLYTFA
   WD 8  509-548    SPI----NNP----NLILDVKNGSGNEQ-RP---------------T-IVKLTSKVLDQDQVLFQ
   WD 9  579-617    -DS----GRK----LMAPLVLGVSISFL-EA---------------C-GTYLLCLTSIGELYCWN

   WD40 Template    TGE----CLR----TLSGHTSGVTSVSF-SP---------------D-GKRLVSGSEDGTIKVWD