Input parameters:

  Query = YOR212W (Len=423)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YOR212W, Len=423):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAAHQMDSITYSNNVTQQYIQPQSLQDISAVEDEIQNKIEAARQESKQLHAQINKAKHKIQDASLFQMANKVTSLTKNKI 80  
WD40-rpts      (____________________________________WD 1____________________________________)  

Query       81 NLKPNIVLKGHNNKISDFRWSRDSKRILSASQDGFMLIWDSASGLKQNAIPLDSQWVLSCAISPSSTLVASAGLNNNCTI 160 
WD40-rpts       (_________________WD 2________________)   (_________________WD 3_______________

Query      161 YRVSKENRVAQNVASIFKGHTCYISDIEFTDNAHILTASGDMTCALWDIPKAKRVREYSDHLGDVLALAIPEEPNSENSS 240 
WD40-rpts      _)            (______________WD 4______________)   (____________________WD 5____

Query      241 NTFASCGSDGYTYIWDSRSPSAVQSFYVNDSDINALRFFKDGMSIVAGSDNGAINMYDLRSDCSIATFSLFRGYEERTPT 320 
WD40-rpts      _______________)   (_________________WD 6________________)   (_______________WD 

Query      321 PTYMAANMEYNTAQSPQTLKSTSSSYLDNQGVVSLDFSASGRLMYSCYTDIGCVVWDVLKGEIVGKLEGHGGRVTGVRSS 400 
WD40-rpts      7_______________)(_________________WD 8_________________)   (_________________WD

Query      401 PDGLAVCTGSWDSTMKIWSPGYQ 423 
WD40-rpts       9________________)    

9 WD40-repeats found in QUERY=YOR212W (Len=423):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-78       6.31  375.11  0.00055       12.5%     30.34
  WD 2:  Seg  5    82-120      9.76  517.68  6.6e-06       32.5%     53.31
  WD 3:  Seg  9   124-162      8.47  464.58  3.4e-05       15.0%     55.26
  WD 4:  Seg 13   175-208      7.07  406.72  0.00021       22.5%     46.39
  WD 5:  Seg 16   212-256      7.63  429.74  0.00010       22.5%     57.77
  WD 6:  Seg 20   260-298      9.49  506.62  9.2e-06       25.0%     53.20
  WD 7:  Seg 24   302-337      5.48  340.96  0.00158       12.5%     29.13
  WD 8:  Seg 28   338-377     10.34  541.74  3.1e-06       30.0%     55.93
  WD 9:  Seg 32   381-419     10.27  538.99  3.4e-06       45.0%     55.29

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-78     MAAHQMDSITYSNNVTQQYIQPQ------SLQDISAVEDEIQNKIEAARQESKQLHAQINKAKHKIQDASLFQMANKVTSLTKN
   WD 2   82-120    -LKPNIVLKGHNNKISDFRWSRD------SKRILSAS--------------------------------------QDGFMLIWD
   WD 3  124-162    -GLKQNAIPLDSQWVLSCAISPS------STLVASAG--------------------------------------LNNNCTIYR
   WD 4  175-208    -----SIFKGHTCYISDIEFTDN------A-HILTAS--------------------------------------GDMTCALWD
   WD 5  212-256    -AKRVREYSDHLGDVLALAIPEEPNSENSSNTFASCG--------------------------------------SDGYTYIWD
   WD 6  260-298    -PSAVQSFYVNDSDINALRFFKD------GMSIVAGS--------------------------------------DNGAINMYD
   WD 7  302-337    -DCSIATFSLFRG---YEERTPT------PTYMAANM--------------------------------------EYNTAQSPQ
   WD 8  338-377    TLKSTSSSYLDNQGVVSLDFSAS------GRLMYSCY--------------------------------------TDIGCVVWD
   WD 9  381-419    -GEIVGKLEGHGGRVTGVRSSPD------GLAVCTGS--------------------------------------WDSTMKIWS

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPD------GKRLVSGS--------------------------------------EDGTIKVWD