Input parameters:

  Query = YOR229W (Len=467)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YOR229W, Len=467):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAKSKSSQGASGARRKPAPSLYQHISSFKPQFSTRVDDVLHFSKTLTWRSEIIPDKSKGTLTTSLLYSQGSDIYEIDTTL 80  
WD40-rpts                                                          (____________________WD 1___

Query       81 PLKTFYDDDDDDDNDDDDEEGNGKTKSAATPNPEYGDAFQDVEGKPLRPKWIYQGETVAKMQYLESSDDSTAIAMSKNGS 160 
WD40-rpts      _________________)                                   (___________________WD 2___

Query      161 LAWFRDEIKVPVHIVQEMMGPATRYSSIHSLTRPGSLAVSDFDVSTNMDTVVKSQSNGYEEDSILKIIDNSDRPGDILRT 240 
WD40-rpts      _______________)   (______________________WD 3______________________)(__________

Query      241 VHVPGTNVAHSVRFFNNHLFASCSDDNILRFWDTRTADKPLWTLSEPKNGRLTSFDSSQVTENLFVTGFSTGVIKLWDAR 320 
WD40-rpts      _________WD 4___________________)     (_________________WD 5_________________)  

Query      321 AVQLATTDLTHRQNGEEPIQNEIAKLFHSGGDSVVDILFSQTSATEFVTVGGTGNVYHWDMEYSFSRNDDDNEDEVRVAA 400 
WD40-rpts                              (_______________WD 6_______________)                    

Query      401 PEELQGQCLKFFHTGGTRRSSNQFGKRNTVALHPVINDFVGTVDSDSLVTAYKPFLASDFIGRGYDD 467 
WD40-rpts                   (_________________WD 7_________________)              

7 WD40-repeats found in QUERY=YOR229W (Len=467):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    53-98       3.96  278.35  0.01099       12.5%     16.27
  WD 2:  Seg  5   134-176      4.84  314.57  0.00358       12.5%     41.42
  WD 3:  Seg  9   180-229      4.13  285.21  0.00889       27.5%     43.02
  WD 4:  Seg 13   230-273      5.67  348.96  0.00123       22.5%     54.84
  WD 5:  Seg 17   279-318      6.56  385.70  0.00039       27.5%     50.53
  WD 6:  Seg 21   345-380      6.15  368.79  0.00067       17.5%     49.89
  WD 7:  Seg 24   414-453      2.84  232.15  0.04534       12.5%     43.12

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   53-98     IPDKSKGTLTTSLLY--SQG------SDIYEIDTTLP-LK-TF-YDD-----DDDDDNDDDD
   WD 2  134-176    QGE------TVAKMQYLESS------DDSTAIAMSKN-GSLAW-FRD-----EIKVPVHIVQ
   WD 3  180-229    -GP------ATRYSS--IHSLTRPGSLAVSDFDVSTN-MD-TV-VKSQSNGYEEDSILKIID
   WD 4  230-273    NSD-RPGDILRTVHV--PGT------NVAHSVRFF-N-NH-LF-ASC-----SDDNILRFWD
   WD 5  279-318    -KP------LWTLSE--PKN------GRLTSFDSSQV-TE-NLFVTG-----FSTGVIKLWD
   WD 6  345-380    -----------KLFH--SGG------DSVVDILFSQTSAT-EF-VTV-----GGTGNVYHWD
   WD 7  414-453    -TG------GTRRSS--NQF------GKRNTVALHPVIND-FV-GTV-----DSDSLVTAYK

   WD40 Template    TGE------CLRTLS--GHT------SGVTSVSFSPD-GK-RL-VSG-----SEDGTIKVWD