Input parameters:

  Query = YOR230W (Len=437)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YOR230W, Len=437):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MPKKVWKSSTPSTYEHISSLRPKFVSRVDNVLHQRKSLTFSNVVVPDKKNNTLTSSVIYSQGSDIYEIDFAVPLQEAASE 80  
WD40-rpts                           (_________________WD 1________________)                    

Query       81 PVKDYGDAFEGIENTSLSPKFVYQGETVSKMAYLDKTGETTLLSMSKNGSLAWFKEGIKVPIHIVQELMGPATSYASIHS 160 
WD40-rpts                             (________________________WD 2________________________)(__

Query      161 LTRPGDLPEKDFSLAISDFGISNDTETIVKSQSNGDEEDSILKIIDNAGKPGEILRTVHVPGTTVTHTVRFFDNHIFASC 240 
WD40-rpts      ____________________WD 3_____________________)     (_________________WD 4_______

Query      241 SDDNILRFWDTRTSDKPIWVLGEPKNGKLTSFDCSQVSNNLFVTGFSTGIIKLWDARAAEAATTDLTYRQNGEDPIQNEI 320 
WD40-rpts      _________)     (_________________WD 5_________________)                      (__

Query      321 ANFYHAGGDSVVDVQFSATSSSEFFTVGGTGNIYHWNTDYSLSKYNPDDTIAPPQDATEESQTKSLRFLHKGGSRRSPKQ 400 
WD40-rpts      _______________WD 6_________________)(__________________________________WD 7____

Query      401 IGRRNTAAWHPVIENLVGTVDDDSLVSIYKPYTEESE 437 
WD40-rpts      _____________________________)       

7 WD40-repeats found in QUERY=YOR230W (Len=437):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    22-60       4.19  287.78  0.00821        7.5%      7.16
  WD 2:  Seg  5   104-157      2.96  236.84  0.03931       20.0%     38.18
  WD 3:  Seg  9   158-206      5.34  335.18  0.00189       20.0%     20.76
  WD 4:  Seg 12   212-250      7.90  441.01  7.1e-05       32.5%     53.63
  WD 5:  Seg 16   256-295      6.51  383.55  0.00042       25.0%     56.26
  WD 6:  Seg 20   318-357      5.61  346.51  0.00133       20.0%     52.08
  WD 7:  Seg 24   358-430      3.21  247.25  0.02861       12.5%     42.70

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   22-60     -PKFV--------------------------------S----RVD--NVLHQRKSLTFSN-V-VV------------PDK-----KNNTLTSSVIYS
   WD 2  104-157    QGETV--------------------------------S----KMAYLDKTGETTLLSMSK-N-GSLAWFKEGIKVPIHIV-----QELMGPATSYAS
   WD 3  158-206    IHSLT--------------------------------RPGDLPEK--DFSLAISDFGISN-D-TE------------TIVKSQSNGDEEDSILKIID
   WD 4  212-250    -GEIL--------------------------------R----TVH--VPGTTVTHTVRFF-D-NH------------IFA-----SCSDDNILRFWD
   WD 5  256-295    -KPIW--------------------------------V----LGE--PKNGKLTSFDCSQVS-NN------------LFV-----TGFSTGIIKLWD
   WD 6  318-357    -NEIA--------------------------------N----FYH--AGGDSVVDVQFSATS-SS------------EFF-----TVGGTGNIYHWN
   WD 7  358-430    TDYSLSKYNPDDTIAPPQDATEESQTKSLRFLHKGGSR----RSP--KQIGRRNTAAWHP-VIEN------------LVG-----TVDDDSLVSIYK

   WD40 Template    TGECL--------------------------------R----TLS--GHTSGVTSVSFSP-D-GK------------RLV-----SGSEDGTIKVWD