Input parameters:
Query = YOR361C (Len=763)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (YOR361C, Len=763):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MKNFLPRTLKNIYELYFNNISVHSIVSRNTQLKRSKIIQMTTETFEDIKLEDIPVDDIDFSDLEEQYKVTEEFNFDQYIV 80
WD40-rpts
Query 81 VNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRLFLYTM 160
WD40-rpts
Query 161 KDVERYNSDDFDTEFREPDMPTFVPSSSLKSWLMDDKVRDQFVLQDDVKTSVFWNSMFNEEDSLVESRENWSTNYVRFSP 240
WD40-rpts (___________________WD 1__
Query 241 KGTYLFSYHQQGVTAWGGPNFDRLRRFYHPDVRNSSVSPNEKYLVTFSTEPIIVEEDNEFSPFTKKNEGHQLCIWDIASG 320
WD40-rpts ________________)(_________________WD 2_________________)
Query 321 LLMATFPVIKSPYLKWPLVRWSYNDKYCARMVGDSLIVHDATKNFMPLEAKALKPSGIRDFSFAPEGVKLQPFRNGDEPS 400
WD40-rpts (_________________WD 3______________
Query 401 VLLAYWTPETNNSACTATIAEVPRGRVLKTVNLVQVSNVTLHWQNQAEFLCFNVERHTKSGKTQFSNLQICRLTERDIPV 480
WD40-rpts __) (_________________WD 4________________) (_____
Query 481 EKVELKDSVFEFGWEPHGNRFVTISVHEVADMNYAIPANTIRFYAPETKEKTDVIKRWSLVKEIPKTFANTVSWSPAGRF 560
WD40-rpts ____________WD 5_________________)
Query 561 VVVGALVGPNMRRSDLQFYDMDYPGEKNINDNNDVSASLKDVAHPTYSAATNITWDPSGRYVTAWSSSLKHKVEHGYKIF 640
WD40-rpts
Query 641 NIAGNLVKEDIIAGFKNFAWRPRPASILSNAERKKVRKNLREWSAQFEEQDAMEADTAMRDLILHQRELLKQWTEYREKI 720
WD40-rpts
Query 721 GQEMEKSMNFKIFDVQPEDASDDFTTIEEIVEEVLEETKEKVE 763
WD40-rpts
5 WD40-repeats found in QUERY=YOR361C (Len=763):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 9 215-257 3.06 240.87 0.03476 27.5% 44.10
WD 2: Seg 12 258-297 5.17 328.30 0.00234 27.5% 36.47
WD 3: Seg 20 365-403 3.63 264.40 0.01690 22.5% 19.03
WD 4: Seg 23 425-463 2.93 235.86 0.04050 15.0% 33.25
WD 5: Seg 26 475-514 4.56 302.84 0.00515 15.0% 37.21
Multiple sequence alignment of 5 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 215-257 NSMFNEEDSLVESRENWSTNYVRFSPKGTYLFSYHQQG-VTAWG
WD 2 258-297 GP----NFDRLRRFYHPDVRNSSVSPNEKYLVTFSTEPIIVEED
WD 3 365-403 -F----MPLEAKALKPSGIRDFSFAPEGVKLQPFRNGDEPSVLL
WD 4 425-463 -G----RVLKTVNLVQVSNVTLHWQNQAEFLCFNVERHTKSGKT
WD 5 475-514 ER----DIPVEKVELKDSVFEFGWEPHGNRFVTISVHEVADMNY
WD40 Template TG----ECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD