Input parameters:

  Query = YPL100W (Len=496)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YPL100W, Len=496):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKVLQFNQDATCCVVAASSHQISIFNCDPFGKCFEIDTKNSKKKTSNNNGSASNSESRNNEESILITNGSRDRTDAEEEE 80  
WD40-rpts      (__________WD 1__________)    (_________________WD 2________________)           

Query       81 DNEDNALVTGNILKEGEFVIEMLFSTSLIAIADRGQGLNKGKKLKIVNTKRKCTICEIVFPHEIVDVVMNRKRMCVLLES 160 
WD40-rpts                                                      (_________________WD 3__________

Query      161 DQIFIYDISCMKPLETIDLWEDHYKRSQANSFSNASNTGTLEGDSANLNRVATNLLANATQKSVNGSNPSVRTRRNSLRS 240 
WD40-rpts      ______)   (_________________WD 4________________)                          (____

Query      241 KIRPRMVLSNDDRSILCFTAYSSPKKNKPNSEALYDVVIYDTLNVTPVNYLNSVHKGNVACLAVSHDGKLLATASDKGTI 320 
WD40-rpts      ________________WD 5____________________)    (_________________WD 6_____________

Query      321 IRVFHTGVDSDYMSSRSLFKEFRRGTRLCNLYQLAFDKSMTMIGCVGDTDTIHLFKLDDASNSLPGDNSSNGHWNEEEYI 400 
WD40-rpts      ____)                  (______________WD 7_____________)(___________________WD 8

Query      401 LASNSNPSMGTPKEIPLSKPRIANYFSKKIKSSIPNQNLSRNFAYITVNESNRSCLGFPDEFPNQVYIASDDGTFSIYSI 480 
WD40-rpts      ___________________)                   (_________________WD 9_________________) 

Query      481 PSKPGECVLTKNNKFT 496 
WD40-rpts                      

9 WD40-repeats found in QUERY=YPL100W (Len=496):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-26       4.05  282.09  0.00979       10.0%     32.26
  WD 2:  Seg  4    31-69       5.44  339.52  0.00165       12.5%     16.14
  WD 3:  Seg 10   129-167      3.35  253.22  0.02383       20.0%     35.79
  WD 4:  Seg 14   171-209      5.34  335.07  0.00190       10.0%      6.84
  WD 5:  Seg 18   236-281      5.17  328.38  0.00234       10.0%     26.70
  WD 6:  Seg 21   286-325      6.78  394.56  0.00030       32.5%     50.65
  WD 7:  Seg 26   344-376      5.32  334.40  0.00194       10.0%     42.88
  WD 8:  Seg 29   377-420      3.00  238.65  0.03720        7.5%     -13.20
  WD 9:  Seg 31   440-479      3.30  250.99  0.02551       15.0%     49.69

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-26     ------------------------MKVLQFNQDAT-CCVVAASSHQ-ISIFN
   WD 2   31-69     -G------KCFEID----TKNSKKKTSNNNGSASN-SESRNNEESI-LITNG
   WD 3  129-167    T-------KRKCTI----CEIVFPHEIVDVVMNRK-RMCVLLESDQ-IFIYD
   WD 4  171-209    -M------KPLETI----DLWEDHYKRSQANSFSN-ASNTGTLEGD-SANLN
   WD 5  236-281    NSLRSKIRPRMVLS----NDDRSILCFTAYSSPKK-NKPNSEALYD-VVIYD
   WD 6  286-325    -T------PVNYLN----SVHKGNVACLAVSHDGK-LLATASDKGTIIRVFH
   WD 7  344-376    RG-----------------TRLCNLYQLAFDKSMT-MIGCVGDTDT-IHLFK
   WD 8  377-420    LD------DASNSLPGDNSSNGHWNEEEYILASNS-NPSMGTPKEI-PLSKP
   WD 9  440-479    -S------RNFAYI----TVNESNRSCLGFPDEFPNQVYIASDDGT-FSIYS

   WD40 Template    TG------ECLRTL----SGHTSGVTSVSFSPDGK-RLVSGSEDGT-IKVWD