Input parameters:

  Query = YPL126W (Len=896)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YPL126W, Len=896):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTQSLGIEQYKLSVVSGGKPALNNLSSVTGNKNIARLSQDQRNYIIPFNNQIKVYSVETRQCVKTLKFANNSLLSGIFLQ 80  
WD40-rpts                      (_________________WD 1_________________)   (_________________WD 

Query       81 EEENNESIVKILLGDITVPQQEDAHLITVFTNNGHVIVLNYKGKLVESPKHFKISLADEKLANVFHSEGNYRILTTFKDP 160 
WD40-rpts      2________________)    (_______________WD 3_______________)(________________WD 4_

Query      161 SQKAHNSLQSYRLYALTFDDAKKQFEVAHQAEWHNVILSNISSNGKLLAHMCKDVSTKDHEHKSISVVSLFDDSVNLSFP 240 
WD40-rpts      ______________)  (___________________WD 5___________________)                   

Query      241 LGSILSSQTQSLSYNTRYVSSMAIDNMGQQLAVGFASGVISIVSLADLQIRLLKWHIDSVLSLSFSHDGSYLLSGGWEKV 320 
WD40-rpts              (_______________WD 6_______________)(__________________WD 7_____________

Query      321 MSLWQLETNSQQFLPRLNGIIIDCQVLGPQGNYYSLILQMTENNSNSDYQFLLLNASDLTSKLSINGPLPVFNSTIKHIQ 400 
WD40-rpts      ____)   (_____________________WD 8____________________)   (_________________WD 9

Query      401 QPISAMNTKNSNSITSLNHSKKKQSRKLIKSRRQDFTTNVEINPINKNLYFPHISAVQIFDFYKNEQVNYQYLTSGVNNS 480 
WD40-rpts      _________________)(___________________WD10__________________)                   

Query      481 MGKVRFELNLQDPIITDLKFTKDGQWMITYEIEYPPNDLLSSKDLTHILKFWTKNDNETNWNLKTKVINPHGISVPITKI 560 
WD40-rpts       (_______________________WD11_______________________)(________________________WD

Query      561 LPSPRSVNNSQGCLTADNNGGLKFWSFDSHESNWCLKKISLPNFNHFSNSVSLAWSQDGSLIFHGFDDKLQILDFDTFKK 640 
WD40-rpts      12_______________________)              (______________WD13______________)      

Query      641 FESLENTKTVSEFTLDSEIQTVKLINDTNLIVATRTTLNAINLLRGQVINSFDLYPFVNGVYKNGHMDRLITCDERTGNI 720 
WD40-rpts          (________________WD14________________)           (_________________WD15_____

Query      721 ALVINQQLTDLDGVPTINYKSRIIIFDSDLSTKLGNFTHHEYISWIGWNYDTDFIFLDIESTLGVVGTTVNTQLSDEVNN 800 
WD40-rpts      ____________)             (__________________WD16__________________)            

Query      801 EGILDGLVSNTITTSASNSDIFAEQLHKLSSRGKKSDTRDKNTNDNDEDEEDIALEFINGEKKDKLVNMNSFTSMFDNIQ 880 
WD40-rpts                                                                                      

Query      881 NVQMDTFFDRVMKVLT 896 
WD40-rpts                      

16 WD40-repeats found in QUERY=YPL126W (Len=896):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    17-56       6.29  374.42  0.00056       25.0%     52.59
  WD 2:  Seg  6    60-98       4.39  296.17  0.00633       15.0%     22.56
  WD 3:  Seg  9   103-138      3.20  246.87  0.02894       20.0%     28.97
  WD 4:  Seg 12   139-175      4.56  302.92  0.00514        5.0%     26.90
  WD 5:  Seg 15   178-221      7.11  408.17  0.00020       17.5%     41.35
  WD 6:  Seg 20   249-284      7.83  437.92  7.8e-05       25.0%     48.52
  WD 7:  Seg 23   285-325      9.13  491.78  1.5e-05       35.0%     54.13
  WD 8:  Seg 27   329-375      4.98  320.47  0.00298        7.5%     47.67
  WD 9:  Seg 31   379-418      4.93  318.12  0.00321        7.5%     52.81
  WD10:  Seg 35   419-461      3.79  271.29  0.01367       17.5%     43.90
  WD11:  Seg 40   482-533      5.51  342.47  0.00151       22.5%     40.69
  WD12:  Seg 44   534-586      5.89  357.82  0.00094       17.5%     48.94
  WD13:  Seg 49   601-634      5.70  350.21  0.00119       22.5%     40.29
  WD14:  Seg 53   645-682      5.79  353.69  0.00106       12.5%     41.76
  WD15:  Seg 57   694-733      4.42  297.14  0.00615        0.0%     28.70
  WD16:  Seg 61   747-788      3.40  255.05  0.02252       12.5%     38.60

Multiple sequence alignment of 16 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   17-56     GGK--------PALNNL----S--SVTGNKNIARLSQ----DQR-NYI-------------IPF-NNQIKVYS
   WD 2   60-98     -RQ---------CVKTL----K--FANNSLLSGIFLQ----EEE-NNE-------------SIVKILLGDITV
   WD 3  103-138    -DA---------HLITV----F--TNNGHVIVLNYK------GK-LVE-------------SPKHF-KISLAD
   WD 4  139-175    ------------EKLAN----V--FHSEGNYRILTTF----KDP-SQK-------------AHNSLQSYRLYA
   WD 5  178-221    FDD---------AKKQFEVAHQ--AEWHNVILSNISS----NGK-LLA-------------HMCKDVSTKDHE
   WD 6  249-284    -------------TQSL----S--YNTRYVSSMAIDN----MGQ-QLA-------------VGFASGVISIVS
   WD 7  285-325    LAD--------LQIRLL----K--WHIDSVLSLSFSH----DGS-YLL-------------SGGWEKVMSLWQ
   WD 8  329-375    -NS---------QQFLP----R--LNGIIIDCQVLGP----QGN-YYS-----LILQMTENNSNSDYQFLLLN
   WD 9  379-418    -LT---------SKLSI----N--GPLPVFNSTIKHI----QQPISAM-------------NTKNSNSITSLN
   WD10  419-461    HSK---------KKQSRKLIKS--RRQDFTTNVEINP----INK-NLY-------------FPH-ISAVQIFD
   WD11  482-533    -GK---------VRFEL----N--LQDPIITDLKFTK----DGQ-WMITYEIEYPPNDLLSSKDLTHILKFWT
   WD12  534-586    KNDNETNWNLKTKVINP----H--GISVPITKILPSPRSVNNSQ-GCL-------------TADNNGGLKFWS
   WD13  601-634    --------------LPN----F--NHFSNSVSLAWSQ----DGS-LIF-------------HGF-DDKLQILD
   WD14  645-682    ENT---------KTVSE----F--TLDSEIQTVKLIN----DTN-LIV-------------ATR--TTLNAIN
   WD15  694-733    LYP---------FVNGV----Y--KNGHMDRLITCDE----RTG-NIA-------------LVINQQLTDLDG
   WD16  747-788    DSD---------LSTKL----GNFTHHEYISWIGWNY----DTD-FIF-------------LDIESTLGVVGT

   WD40 Template    TGE---------CLRTL----S--GHTSGVTSVSFSP----DGK-RLV-------------SGSEDGTIKVWD