Input parameters:

  Query = YPL151C (Len=451)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YPL151C, Len=451):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDGNDHKVENLGDVDKFYSRIRWNNQFSYMATLPPHLQSEMEGQKSLLMRYDTYRKESSSFSGEGKKVTLQHVPTDFSEA 80  
WD40-rpts                                               (_________________WD 1_________________

Query       81 SQAVISKKDHDTHASAFVNKIFQPEVAEELIVNRYEKLLSQRPEWHAPWKLSRVINGHLGWVRCVAIDPVDNEWFITGSN 160 
WD40-rpts      )  (_________________WD 2_________________)     (_________________WD 3__________

Query      161 DTTMKVWDLATGKLKTTLAGHVMTVRDVAVSDRHPYLFSVSEDKTVKCWDLEKNQIIRDYYGHLSGVRTVSIHPTLDLIA 240 
WD40-rpts      _______)   (_________________WD 4________________)   (_________________WD 5_____

Query      241 TAGRDSVIKLWDMRTRIPVITLVGHKGPINQVQCTPVDPQVVSSSTDATVRLWDVVAGKTMKVLTHHKRSVRATALHPKE 320 
WD40-rpts      ___________)   (_________________WD 6________________)   (________________WD 7__

Query      321 FSVASACTDDIRSWGLAEGSLLTNFESEKTGIINTLSINQDDVLFAGGDNGVLSFYDYKSGHKYQSLATREMVGSLEGER 400 
WD40-rpts      ______________)   (_________________WD 8________________)          (____________

Query      401 SVLCSTFDKTGLRLITGEADKSIKIWKQDETATKESEPGLAWNPNLSAKRF 451 
WD40-rpts      _____WD 9_________________)                        

9 WD40-repeats found in QUERY=YPL151C (Len=451):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    42-81       6.62  387.97  0.00037       20.0%     31.35
  WD 2:  Seg  5    84-123      4.98  320.56  0.00298       12.5%     25.74
  WD 3:  Seg  7   129-168      8.16  451.79  5.1e-05       37.5%     55.05
  WD 4:  Seg 11   172-210     10.03  528.97  4.6e-06       42.5%     56.40
  WD 5:  Seg 15   214-252      9.95  525.52  5.1e-06       35.0%     57.08
  WD 6:  Seg 19   256-294      9.77  518.24  6.4e-06       32.5%     54.60
  WD 7:  Seg 23   298-335      7.85  439.13  7.5e-05       22.5%     51.60
  WD 8:  Seg 27   339-377      8.73  475.10  2.5e-05       17.5%     57.00
  WD 9:  Seg 32   388-427      8.36  459.80  4.0e-05       25.0%     49.18

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   42-81     EGQKSLLMRYDTYRKESSSFSG-E-GKKVTLQHVPTDFSEAS
   WD 2   84-123    -VISKKDHDTHASAFVNKIFQP-EVAEELIVNRYEKLLSQRP
   WD 3  129-168    -WKLSRVINGHLGWVRCVAIDPVD-NEWFITGSNDTTMKVWD
   WD 4  172-210    -GKLKTTLAGHVMTVRDVAVSD-R-HPYLFSVSEDKTVKCWD
   WD 5  214-252    -NQIIRDYYGHLSGVRTVSIHP-T-LDLIATAGRDSVIKLWD
   WD 6  256-294    -RIPVITLVGHKGPINQVQCTP-V-DPQVVSSSTDATVRLWD
   WD 7  298-335    -GKTMKVLTHHKRSVRATALHP-K-EFSVASACTD-DIRSWG
   WD 8  339-377    -GSLLTNFESEKTGIINTLSIN-Q-DDVLFAGGDNGVLSFYD
   WD 9  388-427    ATREMVGSLEGERSVLCSTFDK-T-GLRLITGEADKSIKIWK

   WD40 Template    TGECLRTLSGHTSGVTSVSFSP-D-GKRLVSGSEDGTIKVWD