Input parameters:

  Query = YPR032W (Len=1033)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YPR032W, Len=1033):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MFGSKRLKNVKEAFKSLKGQNSETPIENSKASFKSKNSKTSTISKDAKSSSSLKIPISSNNKNKIFSLAETNKYGMSSKP 80  
WD40-rpts                                                                             (________

Query       81 IAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVKGIYLVVINAKDTVYVLSLYSQKVLTTVFVPGK 160 
WD40-rpts      ______WD 1______________)__________________WD 2_________________)  (____________

Query      161 ITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTLTYSL 240 
WD40-rpts      _____WD 3________________)(________________________WD 4_______________________) 

Query      241 VENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQ 320 
WD40-rpts                          (_________________WD 5________________)   (_________________

Query      321 PDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLP 400 
WD40-rpts      WD 6________________)                                                (__________

Query      401 TNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGA 480 
WD40-rpts      ________WD 7_________________)          (_________________WD 8_________________)

Query      481 LSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAET 560 
WD40-rpts       (__________________WD 9__________________)               (________________WD10_

Query      561 LELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSA 640 
WD40-rpts      _______________)                                    (______________________WD11_

Query      641 INNSNIGFVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKIL 720 
WD40-rpts      _____________________)                                                          

Query      721 PASGGKFDVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITGFDDIRLITLGKSKSTHKGF 800 
WD40-rpts                                                                             (________

Query      801 KYPLAATGLSYISTVEKNNDRKNLTVIITLEINGHLRVFTIPDFKEQMSEHIPFPIAAKYITESSVLRNGDIAIRVSEFQ 880 
WD40-rpts      ______________WD12_____________________)                                        

Query      881 ASLFSTVKEQDTLAPVSDTLYINGIRIPYRPQVNSLQWARGTVYCTPAQLNELLGGVNRPASKYKESIIAEGSFSERSSD 960 
WD40-rpts                                                                                      

Query      961 DNNANHPEHQYTKPTRKGRNSSYGVLRNVSRAVETRWDAVEDRFNDYATAMGETMNEAVEQTGKDVMKGALGF 1033
WD40-rpts                                                                               

12 WD40-repeats found in QUERY=YPR032W (Len=1033):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    72-105      4.98  320.43  0.00299       12.5%     41.95
  WD 2:  Seg  5   105-145      2.98  237.73  0.03825       15.0%     50.32
  WD 3:  Seg  9   148-186      5.54  343.67  0.00145       17.5%     55.68
  WD 4:  Seg 13   187-239      4.02  280.70  0.01022       12.5%     37.35
  WD 5:  Seg 17   261-299      6.49  382.79  0.00043       20.0%     46.07
  WD 6:  Seg 20   303-341      3.62  264.31  0.01695        2.5%     12.50
  WD 7:  Seg 26   390-430      3.66  266.02  0.01608        5.0%     32.55
  WD 8:  Seg 30   441-480      2.93  235.86  0.04050        7.5%     29.97
  WD 9:  Seg 33   482-523      6.60  387.14  0.00038       15.0%     23.04
  WD10:  Seg 36   539-576      5.45  339.86  0.00164       17.5%     43.14
  WD11:  Seg 41   613-662      3.60  263.27  0.01750       10.0%     50.48
  WD12:  Seg 54   792-840      3.54  260.95  0.01879       12.5%     17.54

Multiple sequence alignment of 12 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   72-105    ------------------------------NKY--GMSSKPIAAAFDFTQNLLAIATVTGEVHIYG
   WD 2  105-145    GQ-------------Q-----------QVEVVIKLEDRSAIKEMRFVKGIY-LVVINAKDTVYVLS
   WD 3  148-186    -S-------------Q-----------KVLTTV--FVPGKITSIDTDASLDWMLIGLQNGSMIVYD
   WD 4  187-239    IDRDQLSSFKLDNLQK-----------SSFFPA--ARLSPIVSIQWNPRDIGTVLISYEYVTLTYS
   WD 5  261-299    -D-------------F-----------SEKTNE--KRTPKVIQSLYHPNSLHIITIHEDNSLVFWD
   WD 6  303-341    -G-------------H-----------MIMART--VFETEINVPQPDYIRDSSTNAAKISKVYWMC
   WD 7  390-430    NP-------------K-----------QMKIFP-LPTNVPIVNILPIPRQSPYFAGCHNPGLILLI
   WD 8  441-480    YP-------------S-----------GIFTDK--ASLFPQNLSWLRPLATTSMAASVPNKLWLGA
   WD 9  482-523    SA-----------AQN-----------KDYLLK--GGVRTKRQKLPAEYGTAFITGHSNGSVRIYD
   WD10  539-576    LS-------------R-----------TLN--K--AKELAVDKISFAAETLELAVSIETGDVVLFK
   WD11  613-662    VR-------------DRAPTGVRQGFMPSTAVH--ANKGKTSAINNSNIG-FVGIAYAAGSLMLID
   WD12  792-840    KS-------------K--STHKGFKYPLAATGL--SYISTVEKNNDRKNLTVIITLEINGHLRVFT

   WD40 Template    TG-------------E-----------CLRTLS--GHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD