Input parameters:

  Query = YPR137W (Len=573)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YPR137W, Len=573):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSDVTQQKKRKRSKGEVNPSKPTVDEEITDPSSNEDEQLEVSDEEDALESEEEFEGENPADKRRRLAKQYLENLKSEAND 80  
WD40-rpts                                                                                      

Query       81 ILTDNRNAEEKDLNNLKERTIDEYNNFDAGDLDKDIIASRLKEDVAEQQGRVFRYFGDKLLISEAKQSFTRVGENNLTCI 160 
WD40-rpts                                                                      (_______________

Query      161 SCFQPVLNKYTFEESSNGDKNKGRLFAYTVSKDLQLTKYDITDFSKRPKKLKYAKGGAKYIPTSKHEYENTTEGHYDEIL 240 
WD40-rpts      ____WD 1__________________)(_______________WD 2______________)   (______________

Query      241 TVAASPDGKYVVTGGRDRKLIVWSTESLSPVKVIPTKDRRGEVLSLAFRKNSDQLYASCADFKIRTYSINQFSQLEILYG 320 
WD40-rpts      ___WD 3________________)(___________________WD 4___________________)   (________

Query      321 HHDIVEDISALAMERCVTVGARDRTAMLWKIPDETRLTFRGGDEPQKLLRRWMKENAKEGEDGEVKYPDESEAPLFFCEG 400 
WD40-rpts      _________WD 5________________)(_________________WD 6________________)(__________

Query      401 SIDVVSMVDDFHFITGSDNGNICLWSLAKKKPIFTERIAHGILPEPSFNDISGETDEELRKRQLQGKKLLQPFWITSLYA 480 
WD40-rpts      ______WD 7_______________)                                (__________________WD 

Query      481 IPYSNVFISGSWSGSLKVWKISDNLRSFELLGELSGAKGVVTKIQVVESGKHGKEKFRILASIAKEHRLGRWIANVSGAR 560 
WD40-rpts      8__________________)       (____________________WD 9____________________)       

Query      561 NGIYSAVIDQTGF 573 
WD40-rpts                   

9 WD40-repeats found in QUERY=YPR137W (Len=573):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2   145-187      4.33  293.45  0.00689       12.5%     32.59
  WD 2:  Seg  5   188-222      3.87  274.57  0.01235       15.0%     16.22
  WD 3:  Seg  8   226-264      9.92  524.61  5.3e-06       37.5%     47.29
  WD 4:  Seg 11   265-308      7.52  425.35  0.00012       17.5%     49.05
  WD 5:  Seg 15   312-350      8.80  478.03  2.2e-05       25.0%     55.89
  WD 6:  Seg 19   351-389      5.34  335.40  0.00188       20.0%     31.55
  WD 7:  Seg 23   390-426      5.71  350.69  0.00117       25.0%     38.47
  WD 8:  Seg 30   459-500      7.28  415.27  0.00016       25.0%     31.14
  WD 9:  Seg 34   508-553      6.77  394.34  0.00030       30.0%     49.41

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  145-187    -A--KQ----SFTRVGENNLTCISCFQPVLNK-------YTFEESSNGDKNKGRLFA
   WD 2  188-222    -Y--TV----SKDLQLTKYDITDFSKRPKKLK-------Y----AKGG----AKYIP
   WD 3  226-264    -H--EY----ENTTEGHYDEILTVAASPDGKY-------V----VTGGRDRKLIVWS
   WD 4  265-308    TE--SLSPVKVIPTKDRRGEVLSLAFRKNSDQ-------L----YASCADFKIRTYS
   WD 5  312-350    -F--SQ----LEILYGHHDIVEDISALAMERC-------V----TVGARDRTAMLWK
   WD 6  351-389    IP--DE----TR-LTFRGGDEPQKLLRRWMKE-------N----AKEGEDGEVKYPD
   WD 7  390-426    ES--EA---PLFFCEGSIDVV----SMVDDFH-------F----ITGSDNGNICLWS
   WD 8  459-500    LRKRQL----QGKKLLQPFWITSLYAIPYSNV-------F----ISGSWSGSLKVWK
   WD 9  508-553    -F--EL----LGELSGAKGVVTKIQVVESGKHGKEKFRIL----ASIAKEHRLGRWI

   WD40 Template    TG--EC----LRTLSGHTSGVTSVSFSPDGKR-------L----VSGSEDGTIKVWD