Input parameters:

  Query = YPR178W (Len=465)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YPR178W, Len=465):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSKYIALENLPVDLQHKGATQNESTADILKQLPHERLQAVLEKIPEEDLEVRRLLSILKKPEVVENEDVQQRRIRLAEIL 80  
WD40-rpts                                                                                      

Query       81 MVDEIDLENINNMENINGEEVDEEDDEDFFTPATSELIFARRFLINYSLERSRKRLQKEMERHQKFNTRQELLSRRTELQ 160 
WD40-rpts                                                                                  (___

Query      161 RMANLELAGSQLVSTKPISAVSLSTDDMVVATGSWAGDLQVLNSQTLQPLTQKLDSHVGKIGAIDWHPDSNNQMISCAED 240 
WD40-rpts      __________________WD 1____________________)    (_________________WD 2___________

Query      241 GLIKNFQYSNEEGGLRLLGDLVGHERRISDVKYHPSGKFIGSASHDMTWRLWDASTHQELLLQEGHDKGVFSLSFQCDGS 320 
WD40-rpts      ______)       (_________________WD 3________________)   (_________________WD 4__

Query      321 LVCSGGMDSLSMLWDIRSGSKVMTLAGHSKPIYTVAWSPNGYQVATGGGDGIINVWDIRKRDEGQLNQILAHRNIVTQVR 400 
WD40-rpts      ______________)   (_________________WD 5________________)     (_________________

Query      401 FSKEDGGKKLVSCGYDNLINVYSSDTWLKMGSLAGHTDKIISLDISNNSHFLVSGGWDRSIKLWN 465 
WD40-rpts      _WD 6_________________)   (_________________WD 7________________)

7 WD40-repeats found in QUERY=YPR178W (Len=465):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4   157-203      7.48  423.52  0.00012       27.5%     53.97
  WD 2:  Seg  8   208-247      7.61  428.99  0.00010       25.0%     51.36
  WD 3:  Seg 12   255-293      9.18  493.90  1.4e-05       35.0%     52.28
  WD 4:  Seg 16   297-335      9.63  512.44  7.7e-06       37.5%     54.38
  WD 5:  Seg 20   339-377     10.48  547.75  2.6e-06       40.0%     53.55
  WD 6:  Seg 24   383-423      7.61  428.88  0.00010       37.5%     51.43
  WD 7:  Seg 28   427-465      9.64  512.76  7.6e-06       35.0%     51.60

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  157-203    TELQRMANLELAGSQLVSTKPISAVSLSTD--D-MVVATGSWAGDLQVLN
   WD 2  208-247    -Q-------PLTQKLDSHVGKIGAIDWHPD--SNNQMISCAEDGLIKNFQ
   WD 3  255-293    -L-------RLLGDLVGHERRISDVKYHPS--G-KFIGSASHDMTWRLWD
   WD 4  297-335    -H-------QELLLQEGHDKGVFSLSFQCD--G-SLVCSGGMDSLSMLWD
   WD 5  339-377    -G-------SKVMTLAGHSKPIYTVAWSPN--G-YQVATGGGDGIINVWD
   WD 6  383-423    -E-------GQLNQILAHRNIVTQVRFSKEDGG-KKLVSCGYDNLINVYS
   WD 7  427-465    -W-------LKMGSLAGHTDKIISLDISNN--S-HFLVSGGWDRSIKLWN

   WD40 Template    TG-------ECLRTLSGHTSGVTSVSFSPD--G-KRLVSGSEDGTIKVWD