WDRR: WD40 Repeat Recognition
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| JobID: 1H8PH1683302265 Submitted: 2023-05-05 15:57:45 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 175 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = Zm00001d002641_P001 (Len=696) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (Zm00001d002641_P001, Len=696): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MEGCQLLVGCRMEMEEEAFFDSREELTASPAPSPGPALPWSGSLDSVCQRRERFMRSMGLECCPAPLQADAVATVGDVDK 80
WD40-rpts (_________________WD 1________________)
Query 81 EEEAVPEFGRSWSQSDENDCSMSSWSTEETKSLEDGVSDDNSVSGSSRDDASSKVSRSFSSLSFIQRLMSRSGKLSGVPK 160
WD40-rpts
Query 161 AVERRRNGWLRRLGLRSGILDHGGDEASTSSSESEQNRGGRYERVKVRSYRKRSKELSAVYQGQVIKGHDGAILAMKFSP 240
WD40-rpts (_________________WD 2________________) (_________________WD
Query 241 DGQFLATGGEDGVVRVWGVAQSEDCKIPMDDPSCVYLKAHRQSGLGPVDADNEKKCKVKGVKQSADSACVVIPTVVFQIS 320
WD40-rpts 3________________) (_________________WD 4________________)
Query 321 KQPLHEFRGHSGDVLSLSWSNNKHLLSASTDKSVRLWEIGSANCITVFPHSNFVTCVQLNPTNENQFISGSIDGKIRVWD 400
WD40-rpts (________________WD 5________________)(__________________WD 6__________________)
Query 401 IPRCSVIDWVDIRDIITAVCYRPDGKGAVVGTITGNCRFYDASDNLLRFETQVALSGKKKSSLKRITAFEFSPSNPSKLM 480
WD40-rpts (__________________WD 7_________________) (________________WD 8____
Query 481 VTSADSKVKILEGTTVTQNYSGLRTGSCQSLATFTPDGQHIVCASEDSNIYVWNHENQDEASLKHAKTIWSSERFYSNNA 560
WD40-rpts ___________) (_________________WD 9________________) (________________WD10___
Query 561 AIAIPWNGPKPRNPVSLASQILSPQGDNLWCMSKAVKCSSSQSEDSAINSFVSRFAPGIFNLNQEFSSESTCRSSATWPE 640
WD40-rpts _____________) (_________________WD11___________
Query 641 EILPSRSIRAILDESQYKFLRNCFQSTPNSWGQVIVTAGWDGKIRSFQNYGLPAHQ 696
WD40-rpts _____) (_________________WD12________________)
 12 WD40-repeats found in QUERY=Zm00001d002641_P001 (Len=696): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 1-39 4.97 319.90 0.00304 12.5% -4.68 WD 2: Seg 6 173-211 7.25 414.12 0.00016 15.0% 30.65 WD 3: Seg 9 220-258 9.58 510.52 8.2e-06 35.0% 50.67 WD 4: Seg 13 262-300 7.82 437.80 7.8e-05 17.5% 48.85 WD 5: Seg 19 321-358 8.11 449.50 5.4e-05 30.0% 53.41 WD 6: Seg 23 359-400 8.08 448.61 5.6e-05 40.0% 54.61 WD 7: Seg 27 401-441 8.00 444.95 6.3e-05 27.5% 54.97 WD 8: Seg 32 456-492 6.51 383.40 0.00042 22.5% 48.44 WD 9: Seg 35 496-534 8.80 478.33 2.2e-05 30.0% 57.79 WD10: Seg 39 537-574 4.30 292.31 0.00714 10.0% 32.25 WD11: Seg 45 608-646 5.29 333.07 0.00202 10.0% 20.39 WD12: Seg 47 650-688 6.68 390.52 0.00034 12.5% 43.53Multiple sequence alignment of 12 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 1-39 -MEG-CQLLVGCRMEMEEEAFFD-SR-EELTASPAPSPGPALP WD 2 173-211 LG-L-RSGILDHGGDEASTSSSE-SE-QNRGGRYERVKVRSYR WD 3 220-258 -VYQ-GQVIKGHDGAILAMKFSP-DG-QFLATGGEDGVVRVWG WD 4 262-300 -SED-CKIPMDDPSCVYLKAHRQ-SG-LGPVDADNEKKCKVKG WD 5 321-358 -KQP-LHEFRGHSGDVLSLSWSN-NK--HLLSASTDKSVRLWE WD 6 359-400 IGSANCITVFPHSNFVTCVQLNPTNE-NQFISGSIDGKIRVWD WD 7 401-441 IPRCSVIDWVDIRDIITAVCYRP-DG-KGAVVGTITGNCRFYD WD 8 456-492 SG-----KKKSSLKRITAFEFSP-SNPSKLMVTSADSKVKILE WD 9 496-534 -VTQ-NYSGLRTGSCQSLATFTP-DG-QHIVCASEDSNIYVWN WD10 537-574 -NQD-EASLKHAKTIWSSERFYS-NN-AAIAIPW-NGPKPRNP WD11 608-646 -INS-FVSRFAPGIFNLNQEFSS-ES-TCRSSATWPEEILPSR WD12 650-688 -AIL-DESQYKFLRNCFQSTPNS-WG-QVIVTAGWDGKIRSFQ WD40 Template TGEC-LRTLSGHTSGVTSVSFSP-DG-KRLVSGSEDGTIKVWD |
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