Input parameters:

  Query = CsaV3_1G033140 (Len=373)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_1G033140, Len=373):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSDAPPRRLRGHKGTATCCVASNDRPGLVATSGEDGCVCWFDMRCKDVVSIMEVGKEPISSICFKPGNEDVIYISSGKEI 80  
WD40-rpts       (__________________WD 1_________________)   (_________________WD 2_____________

Query       81 KSFDVHQATASKPLGSYSYNKEEINQVSCSPKASFLAAADDGGDVKIIDVHNNCLYKTLRSGHTSICSSVQFLPWRPWEV 160 
WD40-rpts      ___)      (_________________WD 3________________)   (__________________WD 4_____

Query      161 ITGGLDSKLIMWDFSRGRPIQVLDFDIPDNHPSSSTEQCFNPAFIHAIAVPEVNMLDRLGQICVVARGDGIVHVIDIESE 240 
WD40-rpts      ____________)          (________________________WD 5_______________________)(___

Query      241 KSKTSSKTGKKVQSRSKGVTAACDMNNQEQTGRKKLYLDYTVGGHSAAVSCVAFSQFGEKGKFIVSGGNDKCIKLWNWCE 320 
WD40-rpts      ____________WD 6_______________)   (__________________WD 7__________________)   

Query      321 VPDAGKTSSSNNEVLHLNINLSKKVNWLCTTPSETENLIVCDTSKVVKVYNVA 373 
WD40-rpts             (___________________WD 8___________________)  

8 WD40-repeats found in QUERY=CsaV3_1G033140 (Len=373):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     2-42       8.36  460.17  3.9e-05       30.0%     47.62
  WD 2:  Seg  5    46-84       8.93  483.35  1.9e-05       17.5%     57.55
  WD 3:  Seg  9    91-129      8.83  479.54  2.1e-05       25.0%     52.26
  WD 4:  Seg 13   133-173      7.55  426.70  0.00011       37.5%     55.83
  WD 5:  Seg 18   184-236      5.94  360.00  0.00088       27.5%     41.63
  WD 6:  Seg 21   237-272      5.01  321.69  0.00287       10.0%      3.91
  WD 7:  Seg 25   276-317      8.78  477.55  2.3e-05       40.0%     55.70
  WD 8:  Seg 30   328-371      6.18  370.11  0.00064       17.5%     56.59

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    2-42     SD---APPRRL-RGHKGTATCCVAS---N-D----------------RPGLVATSGEDGCVCWFD
   WD 2   46-84     -K---DVVSIM-EVGKEPISSICFK---P-G----------------NEDV-IYISSGKEIKSFD
   WD 3   91-129    -S---KPLGSY-SYNKEEINQVSCS---P-K----------------ASFL-AAADDGGDVKIID
   WD 4  133-173    -N---CLYKTLRSGHTSICSSVQFL---PWR----------------PWEV-ITGGLDSKLIMWD
   WD 5  184-236    DF---D---IP-DNHPSSSTEQCFN---P-AFIHAIAVPEVNMLDRLGQIC-VVARGDGIVHVID
   WD 6  237-272    -------IESE-KSKTSSKTGKKVQ---S-R----------------SKGV-TAACDMNNQEQTG
   WD 7  276-317    -L---YLDYTV-GGHSAAVSCVAFSQFGE-K----------------GKFI-VSGGNDKCIKLWN
   WD 8  328-371    SSSNNEVLHLN-INLSKKVNWLCTT---PSE----------------TENL-IVCDTSKVVKVYN

   WD40 Template    TG---ECLRTL-SGHTSGVTSVSFS---P-D----------------GKRL-VSGSEDGTIKVWD