Input parameters:

  Query = CsaV3_7G028450 (Len=878)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_7G028450, Len=878):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKKGKGRNLGLLPNSLKIISSCLKTVSTNASTVASTVRSAGASVAASISAASSEDEKDQVTWAGFDILEVEPYIIRHILL 80  
WD40-rpts                                                                                      

Query       81 LGYLNGFQLLDVEDASNFKELVSKRGGPVSFLQILPSPAKPGTPPAKSDRHELLRRSHPLLLIVAGEESKDVAMGQNHSP 160 
WD40-rpts                     (_________________WD 1________________)                          

Query      161 MGVLPGSCANSHNAVQFYSLKSHSYVHVLRFRSAVCMVRCSSQIVAVGLATQIYCFDAITLEVVFSVLTSPVPEISGQGT 240 
WD40-rpts                                                       (_________________WD 2_________

Query      241 TGTNVGYGPMAVGPRWLAYPSVGPVPSTTVPLSSQSPFPSQSVNPPSLPGSDRTKAHYPVKSGWKAGRLAGMEADYPGMV 320 
WD40-rpts      ________)                                                                       

Query      321 AVKDFVTRAIITQFRAHTSPLSALCFDPSGTLLVTASIYGNNINIFRIIPNSRSGSSGLSFDCNSSHVHLYKLHRGITSA 400 
WD40-rpts             (_________________WD 3_________________)                           (_____

Query      401 MIQDICFSNYSQWVAIVSSKGTCHVFLLSPFGGEAGLRILNSQGEEPCVLPVLTLPWWSTSSLIINQQSFPPPPPVTLSV 480 
WD40-rpts      _________WD 4_____________)   (_________________WD 5________________)           

Query      481 VSRIKYSSFGWLNTVNNSAGAGKGFVPSGAVAAIFHNTLSHNIQHVNSKPNSLEHLLVYTPSGHVVQHELLPSFGAEPSL 560 
WD40-rpts                                                                                      

Query      561 HSSRTESSSVLHMQEDDLKLKVEPIQWWDACRRSDYSERGECIHDSTSDGQDIAKTNAIQNERTDTEKTHELDFQEMNDG 640 
WD40-rpts                                                                                      

Query      641 SSADEILRVRGQSGITHEQSHWFLSNAEVQLSSGRLPIWQNSKIYVMSSPRINSIAGGEFEIEKVPVQEIEVREKELLPC 720 
WD40-rpts                                                                                      

Query      721 FDHCLSLKSGCNDRGLLLGRCISPTSSEIYQSEVKVTEEIVVICHSKPASLSSTESSDGGSSRRMESSIDFDQASCEKSC 800 
WD40-rpts                                                                                      

Query      801 TPLCQHLNEMYWEKRASESFTTPKSSNILCTQVEGSRIDGSPCGLHFSNSNFGFPSIEQVSSKTPPFNEGGTLQGTGE 878 
WD40-rpts                                                                                    

5 WD40-repeats found in QUERY=CsaV3_7G028450 (Len=878):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5    96-134      4.51  301.03  0.00545        7.5%     13.93
  WD 2:  Seg 12   210-249      3.65  265.44  0.01637       15.0%     25.25
  WD 3:  Seg 16   328-367      7.10  407.85  0.00020       27.5%     55.26
  WD 4:  Seg 21   395-427      5.11  325.67  0.00254       17.5%     44.33
  WD 5:  Seg 23   431-469      2.90  234.31  0.04246       10.0%     -6.83

Multiple sequence alignment of 5 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   96-134    -SNFKELVSKRGGPVSFLQILPSPAKPGTPPAKSD-RHELL
   WD 2  210-249    ATQIYCFDAITLEVVFSVLTSPVPEISGQGTTGTN-VGYGP
   WD 3  328-367    -RAIITQFRAHTSPLSALCFDPSGTLLVTASIYGNNINIFR
   WD 4  395-427    RGI-------TSAMIQDICFSNYSQWVAIVSSKGT-CHVFL
   WD 5  431-469    -FGGEAGLRILNSQGEEPCVLPVLTLPWWSTSSLI-INQQS

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGT-IKVWD