Input parameters:

  Query = sp_P43254_COP1_ARATH (Len=675)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (sp_P43254_COP1_ARATH, Len=675):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEEISTDPVVPAVKPDPRTSSVGEGANRHENDDGGSGGSEIGAPDLDKDLLCPICMQIIKDAFLTACGHSFCYMCIITHL 80  
WD40-rpts                                                                                      

Query       81 RNKSDCPCCSQHLTNNQLYPNFLLDKLLKKTSARHVSKTASPLDQFREALQRGCDVSIKEVDNLLTLLAERKRKMEQEEA 160 
WD40-rpts                                                                                      

Query      161 ERNMQILLDFLHCLRKQKVDELNEVQTDLQYIKEDINAVERHRIDLYRARDRYSVKLRMLGDDPSTRNAWPHEKNQIGFN 240 
WD40-rpts                                                                                      

Query      241 SNSLSIRGGNFVGNYQNKKVEGKAQGSSHGLPKKDALSGSDSQSLNQSTVSMARKKRIHAQFNDLQECYLQKRRQLADQP 320 
WD40-rpts                                                                                      

Query      321 NSKQENDKSVVRREGYSNGLADFQSVLTTFTRYSRLRVIAEIRHGDIFHSANIVSSIEFDRDDELFATAGVSRCIKVFDF 400 
WD40-rpts                                     (_____________________WD 1_____________________) 

Query      401 SSVVNEPADMQCPIVEMSTRSKLSCLSWNKHEKNHIASSDYEGIVTVWDVTTRQSLMEYEEHEKRAWSVDFSRTEPSMLV 480 
WD40-rpts               (_________________WD 2_________________)   (_________________WD 3______

Query      481 SGSDDCKVKVWCTRQEASVINIDMKANICCVKYNPGSSNYIAVGSADHHIHYYDLRNISQPLHVFSGHKKAVSYVKFLSN 560 
WD40-rpts      ___________)(__________________WD 4__________________)    (________________WD 5_

Query      561 NELASASTDSTLRLWDVKDNLPVRTFRGHTNEKNFVGLTVNSEYLACGSETNEVYVYHKEITRPVTSHRFGSPDMDDAEE 640 
WD40-rpts      _______________)   (_________________WD 6________________)               (______

Query      641 EAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA 675 
WD40-rpts      ___________WD 7________________)   

7 WD40-repeats found in QUERY=sp_P43254_COP1_ARATH (Len=675):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3   352-399      7.28  415.25  0.00016       25.0%     53.74
  WD 2:  Seg  7   410-449      6.61  387.54  0.00037       20.0%     52.77
  WD 3:  Seg 11   453-492      8.19  452.95  4.9e-05       37.5%     55.29
  WD 4:  Seg 15   493-534      5.79  353.64  0.00107       20.0%     52.06
  WD 5:  Seg 18   539-576      7.80  436.71  8.1e-05       35.0%     47.98
  WD 6:  Seg 22   580-618      8.53  467.22  3.1e-05       27.5%     56.57
  WD 7:  Seg 26   634-672      5.93  359.80  0.00088       17.5%     48.47

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  352-399    RYSRLRVIAEIRHGDIF-HSANIVSSIEFDR-DDELFATAGVSRCIKVFD
   WD 2  410-449    -MQCPI--------VEM-STRSKLSCLSWNKHEKNHIASSDYEGIVTVWD
   WD 3  453-492    -RQSLM--------EYE-EHEKRAWSVDFSRTEPSMLVSGSDDCKVKVWC
   WD 4  493-534    TRQEAS--------VINIDMKANICCVKYNPGSSNYIAVGSADHHIHYYD
   WD 5  539-576    -SQPLH--------VFS-GHKKAVSYVKFLS-NNE-LASASTDSTLRLWD
   WD 6  580-618    -NLPVR--------TFR-GHTNEKNFVGLTV-NSEYLACGSETNEVYVYH
   WD 7  634-672    -DMDDA--------EEE-AGSYFISAVCWKS-DSPTMLTANSQGTIKVLV

   WD40 Template    TGECLR--------TLS-GHTSGVTSVSFSP-DGKRLVSGSEDGTIKVWD