Input parameters:
Query = 2AQ5_A_PDBID_CHAIN_SEQUENCE (Len=402)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (2AQ5_A_PDBID_CHAIN_SEQUENCE, Len=402):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MSRQVVRSSKFRHVFGQPAKADQCYEDVRVSQTTWDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGH 80
WD40-rpts (____________________WD 1___________________)(________________
Query 81 TAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWD 160
WD40-rpts _____WD 2____________________) (_________________WD 3_________________)
Query 161 VGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFS 240
WD40-rpts (__________________WD 4_________________) (___________________WD 5_________
Query 241 RMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMG 320
WD40-rpts __________)(____________________WD 6___________________) (__________________W
Query 321 YMPKRGLEVNKCEIARFYKLHERKCEPIAMTVPRKSDLFQEDLYPPTAGPDPALTAEEWLGGRDAGPLLISLKDGYVPPK 400
WD40-rpts D 7__________________) (_________________WD 8________________)
Query 401 SR 402
WD40-rpts
8 WD40-repeats found in QUERY=2AQ5_A_PDBID_CHAIN_SEQUENCE (Len=402):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 3 19-63 3.18 245.94 0.02978 17.5% 48.78
WD 2: Seg 7 64-110 8.08 448.52 5.6e-05 35.0% 50.84
WD 3: Seg 11 121-160 7.64 430.33 9.9e-05 40.0% 54.16
WD 4: Seg 15 164-204 7.88 440.09 7.3e-05 27.5% 57.19
WD 5: Seg 19 208-251 5.40 337.53 0.00176 25.0% 46.42
WD 6: Seg 23 252-296 5.83 355.37 0.00101 30.0% 45.21
WD 7: Seg 27 301-342 3.40 255.27 0.02237 20.0% 43.00
WD 8: Seg 30 346-384 3.09 242.50 0.03308 7.5% 17.98
Multiple sequence alignment of 8 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 19-63 AKA------DQCYEDVRVS----QTTW--DSGFCA--VNP-KFMA-L-ICEA---SG-GGAFLVLP
WD 2 64-110 LGKTGRVDKNV----PLVC----GHTA--PVLDIA--WCPHNDNV-I-A-SG---SE-DCTVMVWE
WD 3 121-160 -RE------PV----ITLE----GHTK--RVGIVA--WHP-TAQNVL-L-SA---GC-DNVILVWD
WD 4 164-204 -GA------AV----LTLG--PDVHPD--TIYSVD--WSR-DGAL-I-C-TS---CR-DKRVRVIE
WD 5 208-251 -GT------VV----AEKD----RPHE--GTRPVHAVFVS-EGKI-L-T-TGFSRMS-ERQVALWD
WD 6 252-296 TKH------LE----EPLSLQELDTSS--GVLLPF--FDP-DTNI-VYL-CG---KG-DSSIRYFE
WD 7 301-342 -AP------FL----HYLS----MFSSKESQRGMG--YMP-KRGL-E-V-NK---CEIARFYKLHE
WD 8 346-384 -EP------IA----MTVP----RKSD--LFQEDL--YPP-TAGP-D-P-AL---TA-EEWLGGRD
WD40 Template TGE------CL----RTLS----GHTS--GVTSVS--FSP-DGKR-L-V-SG---SE-DGTIKVWD