Input parameters:

  Query = CsaV3_7G033100 (Len=907)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_7G033100, Len=907):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQSQIMVKSFEVTELPVRSAKFIVRKQWVVAGADDMF 80  
WD40-rpts         (_________________WD 1_________________)   (_________________WD 2____________

Query       81 IRVYNYNTMDKIKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWVCTQIFEGHSHYVMQVTFNPKDTNTFAS 160 
WD40-rpts      ____)   (_________________WD 3________________)(___________________WD 4_________

Query      161 ASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPE 240 
WD40-rpts      __________)(___________________WD 5___________________)   (_________________WD 6

Query      241 LPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYIKGSRRVVIGYDEGTIMVKLGREVPVASMDNTGKIIWAKHN 320 
WD40-rpts      ________________)   (_________________WD 7________________)(__________________WD

Query      321 EIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCGDGEYIIYTALAWRNRSFGSALEIVWSSD 400 
WD40-rpts       8_________________)  (________________WD 9________________)                    

Query      401 GEYAARESTSKIKIFTKNFQEKKSIRPTFSAERIYGGTLLAMCSNDFICFYDWAECRLIRRIDVNVKNLYWADSGDLVAI 480 
WD40-rpts                                                          (________________WD10_______

Query      481 SSDSAFYILKYNLDVVSSYLDSGRSVDEQGVEDAFELLHETSERVRTGLWVGDCFIYNNSSWRLNYCVGGEVTTMFHLDR 560 
WD40-rpts      _________)(__________________WD11_________________)                             

Query      561 PMYLLGYLASHSRVYLMDKEFNVVGYTLLLSLIEYKTLVMRGDLERASELLPSIPKEHHNSVARFLESRGMIEEALEVAT 640 
WD40-rpts                                                                                      

Query      641 DPDYRFELAIQLGRLDVAQEIATTVHSESKWKQLGELAMSNGKLEMAEECLKFAMDLSGLLLLYSSLGDAEGILKLASLA 720 
WD40-rpts                                                                                      

Query      721 KEQGKNNVAFLCLFTLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLNKVNPKAADSLADPEEYPNLFD 800 
WD40-rpts                                                                                      

Query      801 DWQLAVSVEYKFSETRGVYPSALEYANQADRSHTTLVEAFRNMQVDEEELLENGDTNLENGDEETEGHQNGEDSQEDPVV 880 
WD40-rpts                                                                                      

Query      881 VDADSTDGAVLVNGNEADEEWVLTSHH 907 
WD40-rpts                                 

11 WD40-repeats found in QUERY=CsaV3_7G033100 (Len=907):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     4-43       6.45  381.18  0.00045       25.0%     53.99
  WD 2:  Seg  5    47-85       6.73  392.49  0.00032       20.0%     56.58
  WD 3:  Seg  9    89-127      8.17  452.35  5.0e-05       27.5%     54.55
  WD 4:  Seg 13   128-171      7.78  435.97  8.3e-05       37.5%     55.51
  WD 5:  Seg 17   172-215      8.03  446.55  6.0e-05       42.5%     50.78
  WD 6:  Seg 21   219-257     10.01  528.01  4.8e-06       42.5%     56.13
  WD 7:  Seg 25   261-299      5.68  349.21  0.00122       25.0%     54.34
  WD 8:  Seg 29   300-340      3.82  272.39  0.01321        7.5%     34.40
  WD 9:  Seg 33   343-380      3.89  275.19  0.01212       17.5%     46.23
  WD10:  Seg 44   453-490      2.84  231.96  0.04558       17.5%     43.51
  WD11:  Seg 47   491-531      3.63  264.76  0.01671       12.5%     27.65

Multiple sequence alignment of 11 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    4-43     RL--E---I-KRKLAQRSERVKSVDLHP-TEPW--ILASLYSGTVCIWN
   WD 2   47-85     -Q--I---M-VKSFEVTELPVRSAKFIV-RKQW--VVAGADDMFIRVYN
   WD 3   89-127    -M--D---K-IKVFEAHTDYIRCVAVHP-TLPY--VLSSSDDMLIKLWD
   WD 4  128-171    WE--KGWVC-TQIFEGHSHYVMQVTFNPKDTNT--FASASLDRTIKIWN
   WD 5  172-215    LGSPD---P-NFTLDAHQKGVNCVDYFT-GGDKPYLITGSDDHTAKVWD
   WD 6  219-257    -K--S---C-VQTLEGHTHNVSAVCFHP-ELPI--IITGSEDGTVRIWH
   WD 7  261-299    -Y--R---L-ENTLNYGLERVWAIGYIK-GSRR--VVIGYDEGTIMVKL
   WD 8  300-340    GR--E---VPVASMDNTGKIIWAKHNEI-QTVN--IKSVGADYEVTDGE
   WD 9  343-380    -P--L---A-VKELGTCDLYPQSLKHNP-NGRF--VVVCG-DGEYIIYT
   WD10  453-490    WA--E---C--RLIRRIDVNVKNLYWAD-SGDL--VAISS-DSAFYILK
   WD11  491-531    YN-LD---V-VSSYLDSGRSVDEQGVED-AFEL--LHETSERVRTGLWV

   WD40 Template    TG--E---C-LRTLSGHTSGVTSVSFSP-DGKR--LVSGSEDGTIKVWD