Input parameters:

  Query = CsaV3_7G028040 (Len=313)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_7G028040, Len=313):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MASGGTQPYKPYRHLKTLTAHTRAVSCVKFSNDGTLLASASLDKTLIIWSSSSLTLRHRLVGHSEGISDLAWSSDSHYIC 80  
WD40-rpts                (_________________WD 1_________________)   (_________________WD 2_____

Query       81 SASDDRTLRIWDARSPTGECVKTLRGHSDFVFCVNFNPQSNLIVSGSFDETIRIWEVKTGKCLHVIRAHSMPVTSVHFNR 160 
WD40-rpts      ___________)     (_________________WD 3________________)   (_________________WD 

Query      161 DGSLIVSGSHDGSCKIWDASSGTCLKTLIDDKVPAVSFAKFSPNGKFILVATLNDTLKLWNYSAGKFLKIYTGHVNRVHC 240 
WD40-rpts      4________________)   (_________________WD 5_________________)   (_______________

Query      241 VVSTFSVTNGKYIVSGSEDKCVYIWDLQQKTMIQKLEGHTDVVISVSCHPTENKIASAGLDGDRSVRVWVQDP 313 
WD40-rpts      ___WD 6__________________)   (__________________WD 7_________________)   

7 WD40-repeats found in QUERY=CsaV3_7G028040 (Len=313):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    11-50       9.84  521.28  5.9e-06       42.5%     58.82
  WD 2:  Seg  5    54-92      10.16  534.43  3.9e-06       30.0%     56.56
  WD 3:  Seg  9    98-136     10.94  566.54  1.4e-06       47.5%     56.43
  WD 4:  Seg 13   140-178     11.21  577.80  1.0e-06       50.0%     57.57
  WD 5:  Seg 17   182-221      8.93  483.74  1.9e-05       35.0%     54.31
  WD 6:  Seg 21   225-266      8.91  482.84  1.9e-05       40.0%     56.85
  WD 7:  Seg 25   270-310      8.43  462.73  3.6e-05       32.5%     55.12

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   11-50     PYRHLKTL-TAHTRAVSCVKFS---NDGTLLASAS--LDKTLIIWS
   WD 2   54-92     -LTLRHRL-VGHSEGISDLAWS---SDSHYICSAS--DDRTLRIWD
   WD 3   98-136    -GECVKTL-RGHSDFVFCVNFN---PQSNLIVSGS--FDETIRIWE
   WD 4  140-178    -GKCLHVI-RAHSMPVTSVHFN---RDGSLIVSGS--HDGSCKIWD
   WD 5  182-221    -GTCLKTLIDDKVPAVSFAKFS---PNGKFILVAT--LNDTLKLWN
   WD 6  225-266    -GKFLKIY-TGHVNRVHCVVSTFSVTNGKYIVSGS--EDKCVYIWD
   WD 7  270-310    -KTMIQKL-EGHTDVVISVSCH---PTENKIASAGLDGDRSVRVWV

   WD40 Template    TGECLRTL-SGHTSGVTSVSFS---PDGKRLVSGS--EDGTIKVWD