JobID: SMTYK1683300205 - WDRR: WD40 Repeat Recognition

Input parameters:

  Query = Zm00001d049608_P001 (Len=461)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (Zm00001d049608_P001, Len=461):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MPPSKARRKRSLRDITATVATGTVANSKPGSSSTNEGKQQDKKKEGPQEPDIPPLPPVVVNIVPRQGLGCEVVEGLLVPS 80  
WD40-rpts              (______________WD 1_____________)                                       

Query       81 RKREYKPNSKYTVGNHPIYAIGFNFIDMRYYDVFAIASCNSVIIYRCLENGGFGLLQNYVDEDKDESFYTLSWTIDQVDS 160 
WD40-rpts          (___________________WD 2__________________)             (________________WD 

Query      161 SPLLVAAGSNRIIRVINCATEKLDKSLVGHGGSIHEIRTHASKPSLIISASKDESIRLWNVHTGICILVFAGAGGHRHDV 240 
WD40-rpts      3_______________)   (_________________WD 4_________________)   (________________

Query      241 LSVDFHPTEVGIFASCGMDNTVKIWSMKEFWIYVEKSYSWTGHPSKFPTRNIQFPVLTAAVHSDYVDCTRWLGDFILSKS 320 
WD40-rpts      ___WD 5__________________)            (_______________________WD 6______________

Query      321 VKNAVLLWEPKPDKRRPGEGSVDVLQKYPVPKCSLWFMKFSCDFYSNQMAIGNNKGEIYVWEVQSSPPVLIDRLCNQECK 400 
WD40-rpts      ________)            (__________________WD 7_________________)(_________________

Query      401 SPIRQTAVSFDGSTILGAADDGAIWRWDEVDPAASSSKPDQAAAPAAGVGAGAGADADADA 461 
WD40-rpts      ___WD 8____________________)

8 WD40-repeats found in QUERY=Zm00001d049608_P001 (Len=461):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     9-41       4.85  315.09  0.00353       10.0%     -10.26
  WD 2:  Seg  2    85-127      3.83  272.85  0.01302       10.0%     43.46
  WD 3:  Seg  7   141-177      5.88  357.68  0.00094       10.0%     35.94
  WD 4:  Seg 10   181-220      8.08  448.28  5.7e-05       20.0%     56.47
  WD 5:  Seg 14   224-266      7.46  423.01  0.00012       35.0%     57.21
  WD 6:  Seg 19   279-329      5.34  335.06  0.00190       17.5%     41.74
  WD 7:  Seg 23   342-382      6.73  392.86  0.00032       22.5%     52.91
  WD 8:  Seg 27   383-428      7.99  444.60  6.3e-05       22.5%     56.22

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    9-41     --------------------KR---SLRDITATVATGT-V--ANS----KPGSSSTNEGKQQD
   WD 2   85-127    -YK-------------PNSKYT---VGNHPIYAIGFNF-I--DMRYYDVFAIASCNSVIIYRC
   WD 3  141-177    DED----------------KDE---SFYTLSWTIDQVD-S--SPL----LVAAGSNRIIRVIN
   WD 4  181-220    -EK-------------LDKSLV---GHGGSIHEIRTHASK--PSL----IISASKDESIRLWN
   WD 5  224-266    -GI-------------CILVFAGAGGHRHDVLSVDFHPTE--VGI----FASCGMDNTVKIWS
   WD 6  279-329    SWTGHPSKFPTRNIQFPVLTAA---VHSDYVDCTRW---L--GDF----ILSKSVKNAVLLWE
   WD 7  342-382    -VD-------------VLQKYP---VPKCSLWFMKFSC-DFYSNQ----MAIGNNKGEIYVWE
   WD 8  383-428    VQS-------SPPVLIDRLCNQ---ECKSPIRQTAVSF-D--GST----ILGAADDGAIWRWD

   WD40 Template    TGE-------------CLRTLS---GHTSGVTSVSFSP-D--GKR----LVSGSEDGTIKVWD