Input parameters:

  Query = CsaV3_7G028430 (Len=488)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_7G028430, Len=488):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MYGIPSWAIIGDMGYALSRLEIGSDCDGDMSTSASGEAQVSNKPLNNLDDEIAQLTRMKSGPSAHLSQVLPGKPEVYISP 80  
WD40-rpts                   (___________________WD 1___________________)               (_______

Query       81 VKMLAGRECNYSGKGRFSAGDCCHVLSRYLPVNGPWLVDQMTSRAYVSQFSSDGSLFVAGFQGSHIRIYNVDSGWKVQKN 160 
WD40-rpts      __________WD 2________________)(_________________WD 3________________)(_________

Query      161 ILAKSLRWTITDTSLSPDQRYLVYASMSPIIHIVNVTSAETESLANVTEIHEGLDFCAHGDGRDSFGIFSVKFSTDGREL 240 
WD40-rpts      ___________WD 4___________________)                    (________________WD 5____

Query      241 VAGSSDDSIYVYDLETNKLSLRILAHRSDVNTVCFADETGHLVYSGSDDTFCKVWDRRCFISKGKAAGILEGHVEGITFI 320 
WD40-rpts      ____________)   (_________________WD 6_________________)       (________________

Query      321 DSRGDGRYLISNGKDQTIKLWDIRKMSNNATHYNRPRNYDWDYRWMDYPPHAKNLMHPRDRSLATYKGHSVLRTLIRCYF 400 
WD40-rpts      _WD 7________________)                                  (_____________________WD

Query      401 SPEYSTGQKYIYTGSHNSCVYIYDLLTGVLVATLKHHKSPVRDCSWHPQYPMLVSSSWDGDVVKWEFPGSGEAPTPPNKK 480 
WD40-rpts       8_____________________)   (_________________WD 9________________)              

Query      481 RVRRRHFY 488 
WD40-rpts              

9 WD40-repeats found in QUERY=CsaV3_7G028430 (Len=488):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    14-57       5.59  345.40  0.00138       17.5%     17.51
  WD 2:  Seg  4    73-111      6.16  369.12  0.00066        5.0%     44.78
  WD 3:  Seg  8   112-150      8.12  450.08  5.3e-05       22.5%     51.55
  WD 4:  Seg 12   151-195      7.59  428.13  0.00011       22.5%     52.32
  WD 5:  Seg 16   216-253      9.26  497.14  1.2e-05       40.0%     44.39
  WD 6:  Seg 19   257-296      8.49  465.21  3.3e-05       35.0%     56.72
  WD 7:  Seg 23   304-342     10.00  527.82  4.8e-06       40.0%     57.32
  WD 8:  Seg 29   377-424      7.49  424.25  0.00012       17.5%     48.26
  WD 9:  Seg 33   428-466      9.54  508.87  8.6e-06       37.5%     58.13

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   14-57     -G--------YALS-----RLEIGSDCDGDMSTSAS-GEAQVSNKPLNNLDDEIAQLTR
   WD 2   73-111    -K--------PEVY-----ISPVKMLAGRECNYSGK-G-----RFSAGDCCHVLSRYLP
   WD 3  112-150    -V--------NGPW-----LVDQMTSRAYVSQFSSD-G-----SLFVAGFQGSHIRIYN
   WD 4  151-195    VD--------SGWKVQKNILAKSLRWTITDTSLSPD-Q-----RYLVYASMSPIIHIVN
   WD 5  216-253    ----------FCAH-----GDGRDSFGIFSVKFSTD-G-----RELVAGSSDDSIYVYD
   WD 6  257-296    -N--------KLSL-----RILAHRSDVNTVCFADETG-----HLVYSGSDDTFCKVWD
   WD 7  304-342    -G--------KAAG-----ILEGHVEGITFIDSRGD-G-----RYLISNGKDQTIKLWD
   WD 8  377-424    HPRDRSLATYKGHS-----VLRTLIRCYFSPEYSTG-Q-----KYIYTGSHNSCVYIYD
   WD 9  428-466    -G--------VLVA-----TLKHHKSPVRDCSWHPQ-Y-----PMLVSSSWDGDVVKWE

   WD40 Template    TG--------ECLR-----TLSGHTSGVTSVSFSPD-G-----KRLVSGSEDGTIKVWD